Roseomonas fluvialis: Rmf_52650
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Entry
Rmf_52650 CDS
T08992
Symbol
mutM
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rfl
Roseomonas fluvialis
Pathway
rfl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rmf_52650 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfl03400
]
Rmf_52650 (mutM)
Enzymes [BR:
rfl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Rmf_52650 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Rmf_52650 (mutM)
DNA repair and recombination proteins [BR:
rfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rmf_52650 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zinc-ribbons_6
Motif
Other DBs
NCBI-ProteinID:
BDG75336
LinkDB
All DBs
Position
5478948..5479829
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AA seq
293 aa
AA seq
DB search
MPELPEVETVMRGLAAVLEGRRITEVEQRRPDLRFPFPPDLPRRMEGRRVLSFRRRAKYM
LMRLEGGESLLIHLGMSGRMVARQAGAAAVPRIGPQGAVSDARGHNAPPEAHEHLVIATE
DGWRVGFVDPRRFGSVDLVATAAEDLHRLLAGLGPEPLEDGFTDAVLSAALVGRHTPIKA
ALLDQTVVAGLGNIYVCEALFRAGISPRRLAASVAGVRAARLVPAIKAVLAESIGAGGSS
LRDYVRADGELGRFQETFAVYGREGAPCPHCAAPIQRIVQSGRSTFFCARAQR
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgccggaagtggagaccgtgatgcgcggcctggccgcggtgctggagggc
cggcgcatcaccgaggtcgagcagcgccggcccgacctgcgcttccccttccctcccgac
ctgccgcgccggatggaaggccgccgggtgctgtcgttccgtcggcgcgcgaaatacatg
ctgatgcgcctggaaggtggcgagagcctgctgatccacctcggcatgtcggggcgcatg
gtggcgcgccaggcgggcgcggcggcggtgccgcggatcgggccgcagggggcggtgtcg
gacgcgcggggccacaacgcgccgcccgaggcgcatgagcacctggtgatcgcgaccgag
gatggctggcgcgtgggcttcgtggacccgcgtcggttcggatcggtcgacctggtggca
acggcggcggaggacctgcaccggctgctcgccggcctcgggccggagccgctggaggat
ggcttcaccgacgccgtgctctccgccgccctggtcgggcgccacacgccgatcaaggcc
gcgctgctggaccagacggtcgtggcgggcctgggcaatatctatgtctgcgaggcgctg
ttccgtgccggcatctcgccgcgccggctggcggccagcgtggcgggggtgcgggccgcg
cggctggtgccggccatcaaggcggtgctggccgagagcatcggcgccggcgggtcgtcg
ctgcgcgactatgtgcgcgcggatggcgagctcggccgcttccaggagaccttcgcggtc
tatggccgcgagggcgcgccctgcccgcattgcgcggcacccatccagcgcattgtccag
tcgggccggtcgaccttcttctgcgcgcgggcgcagcgttga
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