Reinekea forsetii: REIFOR_00297
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Entry
REIFOR_00297 CDS
T05208
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rfo
Reinekea forsetii
Pathway
rfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
REIFOR_00297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfo03019
]
REIFOR_00297
Enzymes [BR:
rfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
REIFOR_00297
Messenger RNA biogenesis [BR:
rfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
REIFOR_00297
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
HI1480
CMS1
ERCC3_RAD25_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ATX75474
UniProt:
A0A2K8KQ69
LinkDB
All DBs
Position
complement(309115..310434)
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AA seq
439 aa
AA seq
DB search
MSFADLGLSSSILKAVSDMGYETPTPIQLQAIPAVLAQRDLLAAAQTGTGKTAGFTLPIL
HRLSESGNQARGNQVRALVLTPTRELAAQVEESVVNYGKYLPLRSAVVFGGVKINPQMIK
LKRGVDILVATPGRLLDLHNQNAVRFDQLEILVLDEADRMLDMGFINDIKKILRVLPKER
QNLMFSATFAGDVRTLAKTIVNNPVEIAVAPTVTTAKSVTQWIIPVDKGSKPSLLTQVIG
DNNWQQVLVFSKTKHGANRLAAKLESSKITAAAIHGNKSQGARTRALADFKSGAVRVLVA
TDIAARGLDIDELPHVINFDLPNVPADYVHRIGRTGRAGASGEALSFVCHEDLDLLADIQ
NLTGELLERREYPGFKPERALPDLALNVKIPRIKKPKPARSEHRDGQRAPARPSSGRTPR
PQGDGNKTRQPRRSPNGNS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgccgacttaggtctttcttcatctattttaaaagcagtttcagatatgggt
tatgaaacacccaccccgattcagctgcaggccataccggccgtactcgcacaacgggat
ctgttggccgccgcccaaaccggcaccggtaagaccgcgggcttcaccctgcccatcctg
caccgcctatccgaatcgggtaatcaggcgcgcggcaatcaggttcgcgccctggtgtta
acaccaacccgtgagcttgccgcccaggttgaagaaagtgtcgtgaactatggcaaatac
ttgccattgcgttctgccgtagtattcggcggggtgaagatcaatccacagatgattaaa
ctgaaacgcggcgtcgacatcttggtggctaccccaggtcggctattggatctgcacaat
caaaatgcggtgcgttttgatcagctcgaaatactggtgctcgatgaagccgaccgcatg
ctcgacatgggttttatcaacgatattaaaaaaatccttcgggttctgcccaaagaacga
caaaacctcatgttttcggcaacctttgccggggacgtgcgcaccctggcgaagacaatc
gtgaacaatccggtcgagatcgccgtggcgccgacggtgaccaccgccaaatcggtcacc
cagtggatcattccggtcgataagggcagcaaaccctccctgctcacccaggtgatcggg
gacaacaactggcagcaggtcttggtcttttccaagaccaaacacggcgccaaccgcctc
gccgcgaaattagagtcgagcaagatcaccgccgcggccattcacggcaacaagagtcag
ggtgctcgaacgcgtgccctggccgacttcaagagcggtgccgtgcgcgtcctagtcgcg
accgatattgccgcccgcggcctggatatcgatgagctgccacacgtgatcaacttcgac
ctgcccaatgtgccagcggactatgtccatcgtatcggccggaccggtcgagccggcgcc
agcggtgaggccctgtcctttgtctgccatgaagatctcgacctgttggctgacattcaa
aacctgaccggtgagctgttggaacggcgcgagtaccccggctttaagccggaacgcgcg
ttgccggatctggccctcaacgtcaagatcccgcgcattaagaagcctaagccggcgcgc
agcgaacaccgtgacggtcaacgtgctccggcacggccaagcagtggccgcacgccgcgc
ccgcagggtgacggcaataagacccggcagccacgccgcagtccgaacggcaacagctag
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