Reinekea forsetii: REIFOR_00540
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Entry
REIFOR_00540 CDS
T05208
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rfo
Reinekea forsetii
Pathway
rfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
REIFOR_00540 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfo03021
]
REIFOR_00540 (rho)
03019 Messenger RNA biogenesis [BR:
rfo03019
]
REIFOR_00540 (rho)
Transcription machinery [BR:
rfo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
REIFOR_00540 (rho)
Messenger RNA biogenesis [BR:
rfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
REIFOR_00540 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
AAA
AAA_25
AAA_19
ABC_tran
AAA_16
AAA_22
Viral_helicase1
NACHT
Rad17
ATPase_2
Spore_III_AA
NB-ARC
tRNA_U5-meth_tr
nSTAND_NTPase5
RNA_helicase
AAA_30
AAA_18
AAA_24
Motif
Other DBs
NCBI-ProteinID:
ATX75710
UniProt:
A0A2K8KLB8
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All DBs
Position
572798..573760
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AA seq
320 aa
AA seq
DB search
MTRETLRFKVKRKTEPKPDDALANEVSHDDPKKRFLNGVAIHPSECIRLEAGSAEFTARA
IDLISPIGMGQRGLVVASPGCGKTTMLKHICQAVGNAYPEIKLYALLIDERPEEVTDFKR
SVPAEVHASSSDDSYDQHARVANDLLNIAIREAGEGHNVMIVIDSLTRLARVHNAKRKSS
GRTMSGGLDANAMEIPRKMFGAARNIENGGSLTILATILVDTGSQMDQVIFEEFKGTGNM
EIVLSRDVASLRIFPALDIAKSSTRREELLIKASDIGNVRMLRRSLSNLKPEESASKLVD
LLQMHPTNADLLKAVQSEQS
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgagaaacattacgttttaaagttaaacgaaagaccgagcctaaaccagacgat
gcgctagccaatgaggtctcccatgacgaccccaaaaaacgctttttgaacggcgttgcc
atccatccttccgaatgtattcgcttagaagcaggctctgcggagttcaccgctagagca
atagacctcatctcgcccatcggtatgggccagcgcggtttagttgttgcctcgccgggc
tgtggtaaaaccaccatgctaaagcatatttgccaggcggtcgggaacgcttatccggag
ataaagctctatgcattgctcatcgacgagcgcccggaagaagtaacagatttcaagcgc
agtgtgccggcagaggtccatgcttcatcctcggacgatagctacgatcaacacgcccgc
gtggccaatgacctgcttaatattgccatccgcgaagcgggtgaaggtcataatgtgatg
attgttatcgactcgctcactcgtttggcacgggtccacaatgccaaacgtaagagcagc
ggccggaccatgtcaggcggcctggacgctaacgcgatggaaataccgcgcaagatgttc
ggtgcagcacgaaatattgagaacggcggctcgcttaccatactcgccaccatactggtt
gataccggtagccagatggatcaggtcatcttcgaggagtttaaaggcacgggcaatatg
gaaattgtgctctcgcgggatgttgccagtctgcggatcttccccgcgctggatatagcg
aaaagtagcacgcggcgcgaggaactgctgatcaaggcgagcgatatcggcaacgtgcga
atgttacgccggtctctgagcaatcttaagccggaagagagcgccagcaaactggtagac
ttgctgcagatgcacccaaccaatgctgatctattaaaagctgttcagagcgagcaatct
taa
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