Reinekea forsetii: REIFOR_00856
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Entry
REIFOR_00856 CDS
T05208
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rfo
Reinekea forsetii
Pathway
rfo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rfo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
REIFOR_00856 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfo03021
]
REIFOR_00856 (rpoD)
Transcription machinery [BR:
rfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
REIFOR_00856 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ATX76024
UniProt:
A0A2K8KRU0
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Position
complement(924654..926489)
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AA seq
611 aa
AA seq
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MAEKSQRQSRLKELIAKGKEQGYLTFAEVNDHLPEEINSPDQVEDIIAMINDIGIEVFEQ
APDADQLLLADSDQNTDDDATEEAAAALAAVETDTGRTTDPVRMYMREMGTVELLTREGE
IVIAKRIEEGTREVMQAMAFYPGVIESIIKCYDNTLVEDGGRLSDFLTSFQDPDEADPLP
AADSPDAIPVPEAEANSGDAAEDEEEAESGPDPEIARERFTLLKEQLVTALGVIEAKGRY
SKEAHACLSAMGETFSCFKLTPKAFEESITPIKASVTEIRKQERSVIAICVRTLKMPRKT
FIELFVGHETEDLWLNHVLEDPQYSDEAFRHEVELRRAQRKLRNMQKTTGVTLAEVKDIH
RRISIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LAERMDMPEDKIRKVLKISKEPISLETPIGDDEDSSLGDFIEDNTMELPMHSATSTGLRE
ATKEVLAGLTAREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSDHLRSFIDE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaaatctcagcgtcagtcccgtctaaaagaactgatcgcaaaaggcaaagaa
cagggttacttgacctttgccgaagtgaacgaccatctgccggaagaaattaattctccc
gaccaggtggaagacatcattgcaatgatcaacgatatcggcatcgaagtcttcgaacag
gctccggatgccgatcagttgttgcttgccgacagcgatcaaaataccgatgacgacgcg
accgaagaagccgccgcggccttggcggcggttgaaaccgataccggtcgcaccaccgac
ccagtgcgcatgtacatgcgcgaaatgggtaccgttgagctgctaactcgcgaaggcgaa
attgttatcgccaaacgtatcgaagaaggtacgcgggaagtgatgcaggccatggccttt
tacccgggtgttatcgaaagtattattaaatgctacgacaatacgttggtcgaagacggc
ggtcgcctgtctgatttcttaaccagttttcaagatcccgacgaggccgatccgctgcct
gcggccgattcacccgacgcgatcccggtgcccgaagccgaagccaacagtggtgacgcg
gcagaagacgaagaagaggccgaaagtggcccggatccggaaattgctcgcgagcgcttt
actctgctcaaagaacaacttgtgaccgctctaggtgtgatcgaggccaagggtcgttac
agcaaagaagctcatgcctgcctgagtgcaatgggtgagaccttctcctgctttaagcta
accccgaaagcattcgaggagtcgatcaccccgatcaaggcatcagtgactgaaattcgc
aaacaggaacgcagtgtcatcgcgatctgcgttcggacgctgaagatgccgcgcaagacc
tttatcgaattgtttgtcggacatgaaaccgaagatctttggctcaaccatgtgctcgaa
gatccgcaatattcagatgaagcttttcgtcatgaagtggaattgcgtcgcgcccaacgt
aagttgcgcaatatgcaaaagaccactggcgtcaccctagccgaggtgaaggatattcac
cggcggatctccattggcgaagcgcgcgcgcgtcgagctaagaaagagatggtcgaagcc
aacttgcgtttggtaatttccatcgcgaaaaaatataccaaccggggtctgcaatttctc
gatctgatccaggaaggcaatatcggtttgatgaaagcggttgataagtttgaataccgt
cgtggttacaaattttcaacctacgcaacttggtggattcgtcaggcgatcactcgatcg
atcgccgatcaggctcgcaccattcgaattccggtgcatatgatcgaaacgatcaacaaa
ctgaaccgtatttcgcgccagatgctccaggaaatgggtcgtgagcccactcctgaggag
ctggccgagcgcatggacatgcccgaagataagattcgcaaggtgctgaaaatctccaaa
gaaccgatttcgttggaaacaccgattggtgacgacgaagacagctcgctgggcgatttc
atcgaagacaataccatggagctgccgatgcattcggcaacctctacaggcttgcgtgag
gcgactaaggaggttttagccggactcaccgcacgtgaagctaaggtattgcggatgcgt
tttggcattaacatgaatactgaccataccctcgaagaagtgggcaagcagtttgatgtt
actcgtgagcggatacgccagattgaagccaaggcactgcgcaagctacggcatccgtca
cgttccgatcatctacgcagctttatcgacgaataa
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