Reinekea forsetii: REIFOR_01729
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Entry
REIFOR_01729 CDS
T05208
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rfo
Reinekea forsetii
Pathway
rfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
REIFOR_01729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfo03400
]
REIFOR_01729
Enzymes [BR:
rfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
REIFOR_01729
DNA repair and recombination proteins [BR:
rfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
REIFOR_01729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
ERCC3_RAD25_C
UB2H
RecG_dom3_C
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
ATX76868
UniProt:
A0A2K8KQ42
LinkDB
All DBs
Position
1851461..1854910
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AA seq
1149 aa
AA seq
DB search
MTYLTFQLPTKTGDIREIANLSGSAIAFALGEIMEQHQQTLLCIVDSPSELEALITDLEA
YHQERDWDILTFPDWETLPFDNFSPHEDIISERLRVLNLLASRPKAIVLSTAANTVHRLA
PYSAIQGGSFAWRVGQSLNLDQQRRQLEKSGYRASDTVFEHGEFTVRGSLLDVFPMGSKL
PVRIELFDDEIESIRWFDPDTQRSAEKVDEIQLLPGREVPMSEAGINMFRQNFRARFDTD
FSKNAIYRDVSNGIPSPGIEYYLPLFYEETSTLFDYLPEGTLIASSATLTATFERYWLDI
ESRYENRRHDVRNPILTPNELFLPKEQLFAHLGHFPRLILARHASADQQGRYNQAILAPE
NYPIDHRAQEPLSKLECFLQETEHRVLFCAESAGRREALRELLGRIRVRPTDCDSISAFL
GDSAIQIGVSIAPISSGLTLIDPKITLISEAQLFGEYVSQRRRRKKTLTDNNEQIIKSLT
ELHPGTPVVHLDHGIGRYRGLETLEMDGQVQEFLTLEYAQAAKLYVPVASLHLISRYSGA
DADFAPLHRLGNDHWVKTKRKAAEKIRDTAVELLEIYARRAAQSGFGFTLDDIEYQQFSA
GFGFEETDDQASVIEMVLQDMKQARPMDRLVCGDVGFGKTEVAMRAAFVAANNGKQVAIL
VPTTLLAQQHFESFQDRFADWPFRIEVLSRFNSAKQTKLVIDGLADGKVDIVIGTHKLLQ
KSIKLKQLGLLIIDEEHRFGVTQKETIKALRANVDILALTATPIPRSMNMSMSGVRDLSI
IATPPARRLSVKTFVREKDDALVKEAILREILRGGQVYMLHNEVSTINKMAQYLQELVPE
ARIVAAHGQMPERQLERIMSDFYHKRFNVLLCTTIIETGIDVPSANTIIIERADKFGLAQ
LHQLRGRVGRSHHQAYAYLLTPPWKALKRDAQKRLEAIAESQHLGAGFTLATHDLEIRGA
GELLGEEQSGHIEGIGFSLYLELLNKAVTALKKGEHLSLDDIDKQGPEVNLRIPALIPEA
YIFDINSRLSMYKRIASVKNTADMRELQVEMIDRFGLLPDQVKNLCQQTVLRISLETLGI
DRVDMNNRFGTIDFGRKTVVDPIKIVQLVQAEPHRYGLAKGTQLKFTIETETADQRFATI
EQILAKITQ
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgacttacttaacatttcagttaccgaccaaaactggcgatattcgcgaaattgctaat
ctcagtggcagcgccattgctttcgcactcggggagatcatggaacaacaccaacagacg
ctgttgtgtattgtcgactccccatccgagctcgaggccctgattacggatctggaggcc
tatcatcaggagcgcgactgggacatcttgacctttcccgactgggaaaccctgcccttt
gacaacttctcgccccatgaagacattatctcggagcgcttgcgggtcttaaacctactg
gccagtcgacccaaagctatcgttttgtcgaccgcagctaataccgtgcaccgcctggcg
ccctactcggcgattcaaggcggcagttttgcttggcgtgtcggccagtcgctcaatttg
gaccaacagcgtcgtcagctcgaaaagtccgggtatcgtgcctctgataccgtttttgag
cacggcgagttcactgtgcggggctccttgctggacgttttcccgatgggttccaaattg
ccggtccgaatcgaattgtttgatgatgaaatagagtcgattcgctggtttgacccagac
acccagcgcagcgccgaaaaggtcgatgagatccagttattgccgggccgtgaggtgccg
atgagcgaggccgggatcaatatgtttcggcagaattttcgcgcccgattcgataccgac
ttcagcaagaatgccatctaccgagatgtcagcaatggcatcccaagtcccggcatcgaa
tattacctgccattattttacgaagaaacctcaaccctgttcgattacctgcccgagggc
acgctgatcgccagctccgcaaccctgaccgcgacctttgaacggtattggctcgacatc
gaaagccgctatgaaaaccgtcggcacgatgttcgcaaccccatcctgacaccaaacgaa
ctgtttttaccgaaagaacagttgtttgcccatctggggcactttccacgcctaatcttg
gctcgccatgcctcagcagaccagcaaggccgctacaatcaagccattttggcaccggaa
aactatccgatcgaccatcgcgcgcaagagcccctgagtaaactcgagtgtttcttgcaa
gaaaccgaacatcgtgtgctgttttgtgccgaatcggccggccggcgcgaggccttgcgc
gagttgctcggccgcattcgggtgcgacctaccgattgcgattccattagtgcctttctc
ggcgatagcgccatccaaatcggtgttagcattgcgccgatatccagtggcctgactctg
attgaccccaagatcaccctgatcagcgaagcacagctgtttggcgagtatgtctcgcag
cggcggcgacgcaagaagacgctaacagataacaatgaacagatcatcaagagcctaacc
gagctacatccgggtaccccagtggtgcatttggatcacggtatcggccgctatcgagga
cttgaaacgctggaaatggacggccaagttcaggagttcctgaccctggaatatgcccaa
gccgccaagctctatgtgccagtcgccagcttgcatctgatcagccgttattccggtgcc
gatgccgattttgcaccgctgcaccggctcggtaatgaccattgggtcaagacaaagcgc
aaggcggccgagaagatccgtgacaccgccgttgagctgctcgaaatatacgcccgccgg
gcggcccaaagcggttttggcttcactctcgatgatatcgagtatcaacagttttccgcc
ggttttggctttgaagaaaccgacgatcaggcctcggtcatcgaaatggtcctgcaagat
atgaaacaggctcgacccatggaccggttggtgtgtggcgatgtcggcttcggtaaaacc
gaagtagccatgcgcgcggcctttgtcgccgccaacaatggtaaacaggtcgccatcctg
gtaccgaccaccctactggcgcaacagcattttgaaagtttccaggatcgctttgccgac
tggcctttccgcatagaggttctaagccgattcaacagcgctaagcaaaccaaattggtt
atcgacggcctggccgacggtaaggtcgatatcgtcatcggcactcacaagctgctgcaa
aaatcgatcaaactgaagcaactgggcctattgattatcgatgaagagcatcgcttcgga
gtcacccaaaaggaaaccattaaggcgctgcgtgcaaatgtcgatatattggccctaaca
gccacgccgataccgcggtcaatgaatatgtcgatgtccggagtgcgcgatctgagtatt
atcgccacgccaccggcgcgccggctgtcggtaaaaaccttcgtgcgcgaaaaggacgat
gccctggttaaagaagcaattttgcgcgagatcttgcgcggcgggcaagtctatatgctg
cacaatgaggtcagcaccatcaataagatggcgcagtacctacaagaactggtgcccgag
gcgcgcatcgtggccgcacacggccagatgccggaacggcagctggaacgcatcatgagc
gacttctatcataaacggttcaatgtcctgctctgcacgactattatcgaaacgggcatc
gacgtacccagtgccaataccatcatcatcgaacgcgccgacaagtttggcttggcccaa
ctgcatcagttgcgcggccgggtcggccggtcgcatcatcaggcctatgcttatttgcta
acgccaccttggaaagccctaaagcgcgacgcccaaaaacggctcgaagcgattgctgaa
tcgcaacatctcggtgctggctttacgctcgccacccacgatctggaaatccgcggcgcc
ggggaattgctcggcgaagaacagagtggccacatcgagggcatcggtttctcgctctat
ctggagctgctcaacaaggcggttaccgcgcttaaaaaaggcgagcatctgtctctggac
gacatcgacaaacaggggccggaggtcaacttacgcatcccggcactcatcccagaggct
tatatcttcgatatcaattctcgactgtcgatgtataaacgcatcgccagcgttaaaaac
accgccgacatgcgcgagctacaggtcgaaatgatcgatcgctttggcttgttgcccgac
caagttaaaaacctctgccaacagacggtgctgcgcatttcattggaaaccttgggcatt
gatcgggtggatatgaataaccgcttcggcacgatcgactttggtcgcaaaaccgtcgtc
gacccgattaagatcgtgcaattggtccaggccgaaccccatcgttatggcctggccaag
ggtacccaattgaaatttacaatcgaaaccgagacagccgatcagcgatttgccactata
gagcagattctggctaaaattacccaatga
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