Reinekea forsetii: REIFOR_03077
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Entry
REIFOR_03077 CDS
T05208
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rfo
Reinekea forsetii
Pathway
rfo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
REIFOR_03077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfo03400
]
REIFOR_03077
Enzymes [BR:
rfo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
REIFOR_03077
DNA repair and recombination proteins [BR:
rfo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
REIFOR_03077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ATX78196
UniProt:
A0A2K8L1C9
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All DBs
Position
3364254..3367661
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AA seq
1135 aa
AA seq
DB search
MNELDSTSLVLRGAHLIEASAGTGKTHNIVRIYLRLLLERELGVEQILVMTFTNAATAEL
RNRLSRFLRQTAEHWQTDSDPVIVALRGKMSTERAQLLLNRALLQLDEAAIFTIHGFCKR
ALSQQAFFSGMSFNANLEADTSLLTLQATQDWYREQMQFDTYDILYSAWKTPEIFIQHWR
PVIDGSHPISLPPAPQLDTLLANFVSAWPDERPLFAKHNVDNKRAKAETRALNRATLERL
DRLADDGDLADERDLDASQLKSCFSTATKRTVMPATHELMLALASGRDTVKIRLALTGVE
AIRAHIHQDKDRLDQLGFNDLIIQLKSALHGPNADALAAALLEQYPAALIDEFQDTDPDQ
YAILSALYTGQPDAFVCMIGDPKQAIYGFRGGDVFAYLQARQQVDYQWTMNTNYRSDPAV
IHGYNRTFLQQESLLNRHTFGFDIEYRAVNPAPDALDPVWSDGDRRSAVQWVHFASDPSA
SKGLTKAFQSTMARWCVAEIVELISQVRVDDVPVQAGDIALLVRSYREAELLQDYLTAAG
IHSVYLSSRADVFQSAEAEQLLLLLTGIWQFDNDRAFIAALACQWIGLSTGELEALQQNE
HQWAQWQAKFEQWRTDWQKLGLMSMVLAVLQQHFRPSSIRVDRQLTNMLHLAERLQKESG
HLRTPDALLHWFERARQDGAHSEGNLLRLESDEALVKIITLHGAKGLEYPIVFLPFVSYF
GKSPKAASAVRYHDRHSGTAHLSFQASDEIRRLADEEDQAELVRLFYVAATRASKRLYCC
MANFASFPKSALALTLKQSTYDVPALTDLLSVAGAASLLTVPDRQIPAAYWHDPSTHSAV
QPAQFNGHIERDWWLSSFSALTRHVGHSGHTTPDRDETDPALPASSATQALRFRLAKGAE
AGNLLHDCLESADFAAPDFATLYAQAADRYSSLADTYTEAEFTLWISEILAAPLTQGGSL
GELGAEQSLRESEFYFPMRGSRVSLLAELIAEHRGSNYQLPDHLKLKGMMHGFIDLIFER
DGKFYVADYKSTFLGEQLADYGHEAMQASIHSNSYDVQYLIYALALHRYLKVRLSNYQPA
EHFGGVYYFYLRGMGPDQPGGVFYDPLNADLLARLDAIFALPHDVVDQPTGTLTL
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaattagacagcaccagcctggtcttgcgcggcgcgcacctgatagaggccagc
gccggcaccggcaagacgcacaatatagtgcgcatctatttgcgcctgctgttggagcgc
gagctgggtgtcgagcagattttggtgatgacctttaccaacgccgccacggccgaactg
cgcaatcgcctaagccgttttttacgccaaacggcggagcattggcagaccgacagcgat
ccggtgatcgtcgcattgcgtggcaaaatgtctaccgagcgcgcgcaactcctactgaac
cgtgccctgctgcaattggatgaggcggctatttttaccattcacggtttctgtaaacgc
gccctgtcgcagcaggcttttttcagtggcatgagcttcaatgccaatttagaagccgac
accagtttgctgacgctgcaagccacccaggattggtatcgcgaacagatgcaattcgat
acctatgacattctgtattctgcttggaaaacgccagaaatatttatccaacattggcga
ccggtgatcgatggcagtcacccaatcagcttgcccccggccccgcaattagacactcta
ttggcaaatttcgtcagtgcctggccggacgagcgaccgctcttcgccaagcataatgtc
gacaataaacgggccaaggctgaaactcgagcactcaaccgagcaacgttggagcggctc
gatcgcctagccgatgatggcgatctggccgacgagcgcgacctggatgccagccaacta
aaaagctgcttcagtacggccaccaaaagaaccgtcatgccggcaacgcacgagctgatg
ttggccctggcgagcggtcgcgataccgttaagatccgcttggccttgaccggggtcgaa
gccattcgtgcgcatatccatcaggataaggaccgtctcgatcaactcggttttaatgac
ctgatcattcagctcaaatccgctctgcacgggcccaatgccgacgctctggcagcagcc
ctgctagagcagtatccggccgccttaatcgatgaattccaagacaccgaccccgatcag
tatgccattctcagcgccctctataccgggcagccggatgctttcgtgtgcatgattggc
gaccccaagcaggccatctatgggtttcgcggcggcgatgtgtttgcctacttgcaggcc
cgccagcaggtcgattatcaatggaccatgaacaccaactaccgttccgatccggccgtg
atccacggttacaaccgaacctttttgcagcaggaaagtctgctcaaccgccacaccttt
ggtttcgacatcgagtaccgcgcggtcaatccggcgcccgatgcgctcgaccccgtctgg
tccgatggcgaccggcgcagtgcggtgcagtgggtgcattttgccagcgacccgagcgcc
agcaagggcctaaccaaggcattccaaagcaccatggcccgctggtgtgttgccgaaata
gtcgagttgatcagccaggttcgggttgatgatgtgccggtgcaagccggcgacattgcc
ctgctggtgcgcagctatcgcgaagccgaactgctgcaggattacctgaccgcggcgggt
atccattcggtctatctgagctcgcgcgccgatgtgtttcagtcggccgaggccgaacag
ttactgctcttgctcaccgggatctggcagttcgataacgaccgggcctttattgccgcc
ttggcctgccaatggatcggcctcagtaccggcgaactggaagccctgcagcagaacgaa
caccagtgggcccagtggcaggcgaaatttgaacagtggcgcaccgattggcaaaagcta
ggcctgatgagtatggtgctggcggtgttgcagcaacattttcggcccagctcaatccgg
gtcgaccgccagctgaccaacatgttgcatctggccgaacggctgcaaaaggagagcggc
catttgcgcacgcccgatgcgctattgcattggttcgagcgcgcccgtcaagacggcgcg
cacagcgagggcaacctgctgcgcctggaaagcgatgaggcgctggtgaagattattacc
ctgcacggcgccaagggtttggaatacccaatcgtgtttttgccctttgtcagctatttt
ggcaagagcccaaaggcggcctcggcagtgcgctaccacgaccgccacagcggcacagcg
catctatcctttcaagccagtgacgagatccgccggctggccgacgaagaggatcaggcc
gagctggtacgactgttttacgttgccgccacgcgggcctcaaagcggctctattgctgt
atggccaactttgccagcttccctaaatccgccttggcgctgaccctaaagcagtcgacc
tatgatgtgccggccctgaccgacttgctcagcgtcgccggcgcggccagcctgctcacg
gtgcccgaccggcagatcccggcagcctattggcacgatccgagcacgcacagcgcggtg
caaccggcccagtttaatggccatatcgaacgcgactggtggctcagttcgttctcggct
ctgacccgccatgtgggccacagcggccacaccacaccggaccgcgatgaaaccgacccg
gcactgccggccagcagtgccacccaagcattacgctttcgcctggccaagggcgccgag
gccggtaatctattacacgattgcctggagtcggccgacttcgccgcgcccgatttcgcc
acactctatgcgcaggcggcggaccgttacagcagtcttgccgacacttacacagaggct
gagttcaccctgtggataagcgagatcctagccgcgccgctgactcagggcggcagccta
ggcgagctcggtgccgagcagagcctgcgcgaaagtgaattttattttcccatgcgcggc
agccgagttagcctgctggctgagctgattgccgaacaccgcggcagcaactatcagctg
ccggaccatctaaaactcaaaggcatgatgcatggctttatcgatttaatttttgaacgc
gacggcaagttttacgtcgccgactataagtcgacctttctcggcgaacagctcgccgac
tatggccacgaggcaatgcaggccagcattcacagcaatagctacgatgtgcaatacctg
atctacgccctcgccctgcatcgctatctcaaggtgcgcttgtcgaactatcaaccggcc
gagcacttcggtggcgtctattatttttatctgcgcggcatgggcccggatcaacccggc
ggggttttttacgatccgctcaacgccgatctgctggctcgactcgatgcaattttcgcc
ctaccgcatgacgttgtcgaccaaccaaccgggacgctcaccctatga
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