Reinekea forsetii: REIFOR_03125
Help
Entry
REIFOR_03125 CDS
T05208
Name
(GenBank) DNA-directed RNA polymerase beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rfo
Reinekea forsetii
Pathway
rfo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rfo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
REIFOR_03125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfo03021
]
REIFOR_03125
03400 DNA repair and recombination proteins [BR:
rfo03400
]
REIFOR_03125
Enzymes [BR:
rfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
REIFOR_03125
Transcription machinery [BR:
rfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
REIFOR_03125
DNA repair and recombination proteins [BR:
rfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
REIFOR_03125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl
Apocytochr_F_C
Ehbp
Motif
Other DBs
NCBI-ProteinID:
ATX78244
UniProt:
A0A2K8KZP5
LinkDB
All DBs
Position
complement(3418363..3422559)
Genome browser
AA seq
1398 aa
AA seq
DB search
MKDLLNLLKTQGQAEEFDSIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQAKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYYESFVVIDPGLTSLERGQLLTDEEYYESIEEFGDDFDARM
GAEAVQRLLEAMDLEGEISTLREEIPATNSETKIKKLSKRLKLLEAFHKSGNLPQWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVEREEPIVWDILDDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAINLHPLVCAAYNADFDGDQMAVHIPLTIEAQLES
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRARINAKGEGMVFSNIEEVQRAYGAE
QVALQAIVKVRIRQVLIGDDGVRVEKIAIEDTTVGRAILFSIAPDGMPFDMVNQPMKKKA
ISGLLNECYRSVGLKETVVFADQVMYMGFNYATKSGSSIGVNDFVIPKAKYVILGAAEAE
VQEVEEQFAQGLITQGEKYNKVVDLWSRANDQIAKAMMEGISREFTTDRNGNEVEQDSFN
AVFMMADSGARGSATQIRQLAGMRGLMAKPDGSIIENPIKANFREGLSVGEYFISTHGAR
KGLADTALKTASSGYLTRRLVDVAQDVVVTEEDCGTQEGIILEPVIDGGDIVFPLSKQVL
GRVNAVDIIDPATDEIVIPAGTMLDEKWIERIDQLGVDIIKVRSSISCETRFGICAQCYG
RDLARGHRINIGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASSSSAIDNVQISHGGSVHL
HNVKTVVREDGHLVVVSRSGLLAVADEHGRERERYKLPYGSVVSVKDGAKVDSGEVVVRW
DPHTHPIVSEVAGTIQFIGMDEGSTINRKVDDLTGVSTVEIIPQAQRNALGKEIRPMIKL
VDGEGRDILIGSTNQPVQYFLPDSALLNLHDRAAVKVGDVLARIPQASSGNKDITGGLPR
VADLFEARKPKESAILAEMSGTFTFGKETKGKKRIMITPHDGSEPYEELIPKWRQMNVFE
GENVEKGEVLSDGPMNPHDILRVLGVEALAKYVVKEIQEVYRLQGVVINDKHIEVICRQM
LRKALITDSGQTNFIKGDQVEFMHLLEGNDLAVTEDKQIAKFERVLLGITKASLATESFI
SAASFQETTRVLTEGAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHAERKKRRLERTTAK
PTISASEVEAALSQALNK
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttactaaacctgctgaaaacacaaggccaggccgaagaattcgattcgata
cgaatcggactggcatcaccggacatgattcgttcatggtcttttggtgaagtgaagaag
ccggaaacaattaactaccgtacgttcaaacctgagcgtgacggtttgttctgcgcgcgt
atctttggcccaatcaaagattacgaatgcctctgtggcaagtataagcgtctgaagcat
cgtggtgtgatttgtgagaagtgtggcgttgaagtcacccaggccaaggtgcgacgtgag
cggatgggccatattgaattggcagcaccggttgcgcacatctggttcttgaaatcactg
ccatctcgtattggtttgatgttggatatgaccctgcgtgatatcgaacggatactctat
tacgaaagctttgtagttatcgatccgggcttgaccagcttggagcgcggtcaattgctg
accgatgaagaatactatgagtcgatcgaagagttcggcgatgacttcgatgcccgcatg
ggtgccgaagccgttcagcgtctgctggaagccatggatcttgaaggtgagatttctacc
ctgcgcgaagaaattcccgcaactaactccgaaaccaagatcaagaagctgtccaagcgt
ttgaagctgctcgaagccttccacaagtcgggcaatttgccgcagtggatggtgttgacg
gttctgcctgtgttgcccccggatttacgtccgttggtaccgcttgacggtggccgtttc
gcaacctccgatctaaacgatctgtatcgccgagtgattaaccgtaacaaccgcttaaag
cgcttgttagagttgtcagcgccggacatcatcgtgcgcaacgaaaagcgtatgttgcaa
gaatcagttgatgccttgctcgacaacggacgtcgcggccgagccattaccggttctaac
cgtcgtccgttgaagtcgcttgccgatatgatcaagggtaagcagggtcgtttccgacaa
aacctcttgggtaagcgagtcgactattcaggtcgttcggttatcgtggtcggaccaaca
ctgcgtttgcatcaatgcggtttgccgaagaaaatggctttggaactgttcaagccgttt
atctttagcaagctggagcaccgcggtttggcgaccaccatcaaggccgccaagaagatg
gttgagcgcgaggaaccgatcgtttgggatatcctcgacgatgtgattcgtgaacatcca
gtcttgttgaaccgcgccccaacccttcaccgtctgggtatccaggcgtttgaaccggta
ttgatcgaaggcaaggccattaacctgcatcctctcgtttgtgcggcttataatgccgac
ttcgacggtgaccagatggctgtgcacattccgttgaccattgaagcgcagctcgaatca
cgcgccctgatgatgtcgaccaacaacattctgtcaccggcttccggtgagcctattatc
gttccatcgcaggacgttgtcttgggtctgtattacatgactcgtgcgcgtatcaatgcg
aagggcgaaggcatggtgttctcgaacatcgaagaagtccagcgcgcctacggtgctgag
caggttgccctgcaggccatcgttaaggtccgtattcgccaggtcttgatcggtgatgac
ggcgttcgagtcgagaagattgccattgaagacaccacagttggacgtgcaatcctgttc
tctatcgcgcccgatggtatgccatttgacatggtcaaccagccgatgaagaagaaagcc
atttccggtttgctcaacgagtgctatcgctcggtgggactgaaggaaacggtggtcttt
gccgaccaggttatgtacatgggcttcaattacgcgactaaatccggttcttctattggt
gtgaatgactttgttattccaaaagccaagtatgtgatactcggcgcagccgaagcggaa
gttcaggaagttgaagaacaatttgctcagggtctgatcacccagggtgaaaaatacaac
aaggtggtcgatctctggtcacgtgccaatgaccaaattgccaaagcgatgatggaagga
atctcacgagaattcaccaccgaccgcaatggtaacgaagttgagcaggattcgtttaac
gccgtctttatgatggccgattccggtgctcgaggcagcgcgacgcagattcgtcagctc
gccggtatgcgaggcctgatggctaagccagatggctcgatcatcgaaaacccgattaag
gcaaacttccgcgaaggcttgtcggtaggtgaatacttcatctccactcacggcgcgcga
aaaggtttggccgatacggcactgaaaacggcatcgtcgggttacctgacgcgtcgcttg
gtagatgtagcgcaagacgtggtggtaaccgaagaagactgtggcacccaggaaggtatt
atcttggagccggtcatcgacggcggcgacatcgtcttcccattgagtaagcaggtattg
ggtcgagtcaatgcggtcgatattatcgatccggcgaccgacgagatagtgatccctgca
ggcaccatgctcgatgaaaaatggattgaacgcattgaccagctcggtgtcgatatcatt
aaggtacgctcatccatctcgtgcgagacacgctttggtatctgtgcccagtgttatggt
cgcgacctggcccgtggccatcggatcaatatcggtgaggcggtcggtattattgccgct
cagtcgatcggtgagcctggtactcagctgacgatgcggaccttccacatcggcggcgcg
gcctccagttcttctgcgatcgataacgtccagatcagccatggcggcagcgtgcatttg
cacaacgtcaagacggttgtccgtgaagacggtcatctggtcgtggtaagccgttcaggc
ctgttggcagtagccgatgagcatggccgtgagcgtgagcggtacaagctgccgtacggt
tctgtagttagcgttaaagacggcgccaaggtcgattcaggtgaggttgtggttcgttgg
gatccgcacactcaccccatcgtgtcggaggtggccggtaccatccaatttattggtatg
gacgaaggcagcacgatcaaccgtaaggtcgatgatttaaccggtgtcagtaccgttgaa
atcatcccccaggctcagcgtaatgccctcggtaaagaaattcgtccgatgattaaattg
gtcgatggtgaaggtcgtgacatattgatcggcagcaccaatcagccggtacagtacttc
ctgccggacagcgcgctgttaaacctgcatgaccgagcagctgttaaggtcggtgatgta
ttggctcgtatcccgcaagccagcagtggcaacaaggatattaccggtggtttgccacgg
gttgcggatctatttgaagcccgtaagccgaaagaatccgccatcttggcggaaatgtcc
ggtacctttaccttcggtaaagagaccaagggcaagaagcgcatcatgatcaccccgcac
gatggttctgagccgtatgaggaattgattccgaaatggcgccagatgaacgtgttcgaa
ggtgagaacgtcgaaaaaggcgaagtactgtctgacggcccaatgaacccacacgatatt
ctgcgtgtgctcggggttgaagccttggccaagtatgtggtcaaggaaattcaggaagta
tatcgactccagggtgttgtcatcaacgacaaacacattgaagtcatttgccgccagatg
ctgcgtaaagcattgattaccgacagtggacagactaatttcatcaagggcgaccaagtt
gaatttatgcatctgttggaaggtaacgacttagcggtcaccgaagataagcagatcgcc
aagtttgagcgtgtgttgctgggtatcaccaaggcatcactggccaccgagtcctttatc
tctgccgcatcgttccaagaaacgacgcgtgtattgaccgaaggtgcggtaaccggcaaa
cgcgactatttacgcggtctgaaagaaaacgtagtggtaggtcgcttgattcctgccggt
accggtcttgcgtatcacgctgaacgtaagaaaagacgtcttgaacgaaccacagccaag
ccgacgatcagtgcatcggaagttgaagctgcgctcagtcaggcgttaaataagtag
DBGET
integrated database retrieval system
