Reinekea forsetii: REIFOR_03299
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Entry
REIFOR_03299 CDS
T05208
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rfo
Reinekea forsetii
Pathway
rfo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
REIFOR_03299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfo03400
]
REIFOR_03299
Enzymes [BR:
rfo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
REIFOR_03299
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
REIFOR_03299
DNA repair and recombination proteins [BR:
rfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
REIFOR_03299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ATX78402
UniProt:
A0A2K8KUY6
LinkDB
All DBs
Position
complement(3610997..3611812)
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETTRRGVEPHLVGRTINRMVVRDARLRWPIPDALPAWAQDQVIVRVERRSKYL
FLVLERGTVLVHLGMSGSLRILLDDLTPTKHDHVDLELDNGTRLRYHDPRRFGLWLYTET
DVHSHRLIENLGPEPLTDAFDFDYLYPRTRKRKTKIKTLLMDAKLVVGVGNIYANEALFL
SGITPHKLAGRLTKAECRSLVSNVKSLLAMAINQGGTTLKDFVGADGKPGYFAQSLNVYG
RAGLPCRRCATLIKEVRTNNRSTCYCHQCQS
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattacccgaagttgaaaccacccgccggggcgttgagccccacctggtgggt
cgtaccatcaatcgcatggtggttcgggatgcccgcttgcgttggccgattcccgatgca
ctgccggcttgggcgcaagatcaggttatagtgcgcgtcgagcggcgctccaaatatctt
ttcctcgttctagaacgcgggactgtgttggtccatctgggtatgtcgggcagcttgcgc
atcctgctcgatgacctaacgcccactaagcacgaccatgtcgatctggaacttgataac
ggcaccaggctgcgctatcacgacccacgccgctttggtctgtggctctataccgaaacc
gacgttcatagccatcgcctgattgaaaatctgggccctgaaccgctcaccgacgcgttc
gacttcgactatctctatccgcgtacgcgcaaacgtaagaccaagattaagaccctgctg
atggatgccaagttggtcgttggggtggggaatatctatgccaatgaggcgctgttctta
agtggcatcaccccgcacaaactcgccggacgattgaccaaggcggaatgccgcagccta
gtcagcaatgttaaatccttgttggcgatggccatcaatcagggcggcaccacgctcaaa
gacttcgtcggtgccgatggcaagccgggctatttcgcccaatcgctcaacgtctatggc
cgagccgggctgccctgtcggcgttgtgccacgcttattaaggaagtgcgcaccaataac
cgcagtacctgctactgtcaccagtgtcagtcctag
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