Rhinolophus ferrumequinum (greater horseshoe bat): 117013118
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Entry
117013118 CDS
T07722
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117013118 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rfq03041
]
117013118 (PRPF8)
Spliceosome [BR:
rfq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117013118 (PRPF8)
Complex C
U5 SnRNP specific factors
117013118 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
117013118
NCBI-ProteinID:
XP_032945829
Ensembl:
ENSRFEG00010008080
LinkDB
All DBs
Position
21:16250270..16276404
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtttttccttacagagggccgggtaacccggtacccggccctctagccccg
ctgccggactacatgtcggaggagaagctgcaggaaaaagcccgaaaatggcagcaatta
caggccaagcgctatgcggaaaagcggaagtttggatttgtggatgctcagaaggaagac
atgcccccagaacatgtcaggaagattattcgagaccatggagacatgaccaacaggaag
tttcgccatgacaaaagggtctacttgggtgccttaaagtacatgccccatgcagtcctc
aaactcctggagaacatgcctatgccttgggagcagattcgggatgtgcctgtactatac
cacatcactggagccatctcctttgtcaatgagattccttgggtcattgaacctgtctac
atctcccagtgggggtcaatgtggattatgatgcggcgagaaaaaagagacaggaggcat
ttcaagaggatgcgttttcccccttttgatgatgaggagccacctttggactatgctgac
aacatcctagatgttgagccgctggaggccattcagctagagctggaccctgaggaggac
gccccggtgttggactggttctatgaccaccagccattgagggatagcaggaagtatgtg
aatggctctacttaccagcgctggcagttcacactgcccatgatgtctactctctaccgc
ctggccaatcagctcctgacagacttggtagatgacaactacttctatttgtttgatctg
aaggccttctttacgtccaaggcactcaatatggccattcctggaggccccaaatttgaa
cctcttgttcgagatatcaacctacaggacgaagattggaatgaattcaatgatattaac
aagatcatcatccggcagcccatccgcactgagtacaagattgcttttccttacttgtac
aacaacctcccgcaccacgtccacctcacctggtaccacactcctaatgttgtgttcatc
aaaactgaggatcctgatttgccagctttctactttgatcctttgatcaacccaatttcc
cacaggcactctgtcaagagccaagaaccattgccagatgatgatgaagagtttgagctc
ccagagtttgtggagcccttcctgaaggacacacccctctacacagataatacagccaat
ggcattgccctgctctgggctccacggcccttcaacctacgctctggtcgtacgcgccgg
gccctggacatccctcttgtcaagaactggtatcgggagcattgtcctgctgggcagccc
gtgaaagtgagggtgtcctaccagaagctgcttaagtactatgtgcttaatgctttgaag
caccggcctcctaaagcccagaagaagaggtatctattccgctccttcaaagccaccaaa
ttctttcagtccacaaagctggactgggtggaggtaggactccaggtttgccgccaaggg
tacaacatgctcaaccttctcatccaccgtaaaaacctcaactatctgcatctggactac
aacttcaacctcaagcctgtcaagacgctcaccaccaaggaaagaaagaagtctcgtttt
gggaatgctttccacctgtgtcgagaagttctgcgtttaactaagctggtggtagatagt
catgtgcagtatcgattgggcaatgtggacgccttccagctggcggacggattgcagtat
atctttgcccatgtggggcagctgacaggcatgtaccggtacaaatacaagctaatgcgg
cagattcgcatgtgcaaggacctgaagcatctcatctattaccgcttcaacacgggacct
gtagggaagggccctggctgtggcttctgggctgctggctggcgggtctggctgtttttc
atgcgtggcattacccctttgctggagcgatggctgggcaacctcctggcccggcagttt
gaaggccgacactcgaagggggtggcgaagactgtcacaaagcagcgagtggagtcacat
tttgaccttgagcttcgggcagctgtgatgcatgacattctggacatgatgcctgagggg
atcaaacagaacaaggcccggacaatcctgcagcacctcagtgaagcctggcgttgctgg
aaggccaacattccctggaaggtgcctggactgccaacacccatagagaacatgatcctt
cgatatgtgaaggccaaggctgattggtggaccaacactgcccactacaaccgagaacgg
atccgccgtggggccactgtggataaaactgtttgtaaaaagaacctgggacgcctcacc
cggctctatctgaaggcagaacaggagcggcagcacaactacctgaaggacgggccttac
atcacagcagaggaggcggtggcagtgtataccaccactgtgcattggttggaaagccgt
aggttctcacccatcccattccctccgctctcctacaagcatgataccaagttgctcatc
ttggccttggagcggctcaaggaagcttacagtgtgaagtctcggttaaaccagtctcaa
agggaggagctaggtctgatcgagcaagcctacgacaacccccacgaggcattgtcccgc
atcaagcgtcatctcctcacacagagagccttcaaagaagtgggcattgagttcatggat
ctctatagccacctggtgccagtgtatgatgtagagccactagagaagataactgatgcc
tacctagaccagtacctttggtatgaagctgacaagcgtcgcctttttccaccctggatc
aagcctgctgacacagaaccacctcctctgcttgtttacaagtggtgccaaggcatcaat
aacctgcaggacgtgtgggagacaagtgagggcgagtgcaacgtcatgttggagtcacgc
tttgagaagatgtacgaaaagatcgacttgaccctgctgaataggctgctgcgactcatt
gtggatcataatatagctgactacatgacagccaaaaacaacgtcgtcatcaactataag
gacatgaaccatacaaattcatatgggatcatcagaggcctgcagtttgcctcattcatc
gtgcagtactatggcctggtgatggatttgcttgtgttgggattacaccgagccagtgag
atggctgggccgcctcagatgccaaatgacttcctcagtttccaggacatagccaccgaa
gcggcccaccccattcgtctcttctgcagatacattgatcgcatccatattttcttcagg
ttcacagcagatgaggctcgggacctgatccagcgttacctgacagagcaccctgacccc
aacaatgaaaacatcgttggctataataacaagaagtgctggccccgagacgcccgcatg
cgcctcatgaagcatgatgtcaacttgggtcgggcagtgttctgggacatcaagaaccgt
ctgccacggtcagtgactacagttcagtgggagaacagcttcgtgtcggtgtatagtaag
gacaaccccaacctgctgttcaacatgtgtggctttgagtgccgcatcctgcctaaatgc
cgcaccagctatgaggagttcacccacaaagatggggtctggaacctgcagaatgaggtt
actaaggagcggacagcccagtgtttcctgcgtgtggatgatgagtcgatgcagcgcttc
cacaaccgcgtgcgtcaaattctgatggcctctggctctaccaccttcaccaagattgtg
aataagtggaacacagcacttattggccttatgacatacttccgggaggctgtggtgaac
acccaggagctcctagacttgctggtgaagtgtgaaaacaagatccagacacgtatcaag
attggcctcaactcgaagatgccaagtcggttccccccggttgtgttctacacccccaag
gagttgggtggactcgggatgctctcaatgggccatgtactcatcccccagtccgacctc
aggtggtccaaacagacagacgtaggtatcacacactttcgttcaggaatgagccatgag
gaagaccagctgattcccaacttgtaccgctacatacagccatgggagagtgagttcatt
gattctcagcgggtctgggctgagtatgcgctcaagagacaagaggccattgctcagaac
agacgactgaccttagaagatctagaagattcatgggatcgtggcattcctagaattaac
acactgtttcagaaggaccggcacacattggcttatgataagggctggcgtgttcgaact
gactttaagcagtaccaggttttgaagcagaaccctttctggtggacacatcagcgacat
gatgggaagctctggaacctgaacaactaccgtacagacatgatccaggccctgggtggt
gtggaaggcattctggaacacacactcttcaagggcacttactttcctacctgggaggga
cttttctgggagaaggccagtggttttgaggagtctatgaagtggaaaaagctaactaat
gctcagcgatctggattaaaccagattcccaatcgtagattcaccctctggtggtcccca
actatcaacagagccaatgtatacgtaggctttcaggtgcagctggacctgactggtatc
ttcatgcacggcaagatccccacactgaagatctctctcatccagatcttccgagctcac
ctgtggcagaagatccacgagagcatcgttatggatttgtgtcaggtgtttgatcaggaa
ttagatgcactggaaattgagacagtacaaaaggagacaatccacccccgaaagtcctat
aagatgaactcttcctgtgcagatatcctgctctttgcctcctataagtggaatgtctcc
cggccctcattgctggcagactccaaggatgtgatggacagcaccaccactcagaagtat
tggattgacatccagttgcgctggggggactatgattcccatgacattgagcgctacgcc
cgggccaagttcttggactataccacggataacatgagcatctacccttcacccacgggc
gtgctcattgccattgacttggcttataacctgcacagtgcctatggaaactggttccca
ggcagcaagcctctcatacagcaggccatggccaagataatgaaggcaaaccctgccttg
tacgtgttacgtgaacggatccgcaaggggctgcagctctattcatctgagcccactgag
ccctatctgtcctctcagaactatggtgagctcttctccaaccagattatctggtttgtg
gatgacactaatgtctacagagtgactattcacaagacctttgaagggaacttgacaacc
aagcccatcaatggggccatcttcatcttcaacccacgcacagggcagctgtttctcaag
ataatccacacatctgtgtgggctggacagaagcgtctggggcagttggcaaagtggaag
acggctgaggaggtggctgccctgatccgatctctgcctgtggaggagcagcccaagcag
atcattgtcaccaggaagggcatgctggatccactggaggtgcacttgttggacttcccc
aatattgtgatcaaaggatcagagcttcaactccccttccaggcttgtcttaaggtggaa
aagtttggggacctcatccttaaagccactgagccccagatggttctctttaacctctat
gatgactggctcaagactatctcatcttacacggctttctcccgcctcatcttgattctg
cgtgccctgcatgtcaataatgaccgggccaaggtgatcctgaagccagataagactact
attacagaaccacaccacatctggcccactctgactgacgaggaatggatcaaggtggag
gtgcagctcaaggatcttatcttggcagattacggcaagaaaaacaatgtgaatgtggca
tcactgacacaatccgaaattcgagacatcatcctgggtatggagatctcggcaccctca
cagcagcggcagcagatcgctgagattgagaagcagaccaaggaacagtcacagctgact
gcaacacagactcgtactgtcaacaagcacggtgatgagatcattacttctaccaccagc
aactatgagacccagactttctcatctaagactgaatggagggtcagggccatctctgct
gccaacctgcacctaaggaccaatcacatctatgtttcatctgatgacatcaaggagact
ggttatacctatatccttcccaagaatgtgcttaagaagttcatctgcatatctgacctt
cgggcccaaattgcagggtacctgtatggggtgagcccaccagataacccccaggtgaag
gagatccgctgcatcgtgatggttccacagtggggcacccaccagacagtgcacctgcct
ggccagctgccccagcatgagtacctcaaggagatggaacccttaggttggatccacact
cagcccaatgagtccccccagctatcgccccaggatgtcaccacccatgccaagatcatg
gctgacaacccatcttgggacggcgagaagaccatcatcatcacttgcagcttcacacca
ggctcctgtacactgacagcctataagctgacccccagtggctatgaatggggccgccag
aacacagacaaaggcaacaatcccaaggggtacctaccatcgcactacgagagggttcag
atgttgctgtcagaccgctttctcggcttctttatggtccctgcccagtcctcgtggaac
tacaactttatgggtgtccggcatgatccgaacatgaagtatgagctgcagctggcaaac
cccaaagagttctaccacgaggtgcacaggccctcccacttcctcaacttcgcccttctg
caggagggcgaagtctactctgcagaccgagaggacctctacgcctag
DBGET
integrated database retrieval system
