Rhinolophus ferrumequinum (greater horseshoe bat): 117016041
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Entry
117016041 CDS
T07722
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
117016041 (COL20A1)
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
Ig_DSCAM-DSCAML_C
Motif
Other DBs
NCBI-GeneID:
117016041
NCBI-ProteinID:
XP_032950945
Ensembl:
ENSRFEG00010014109
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Position
23:complement(618515..640714)
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AA seq
1353 aa
AA seq
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MVPSDPPVGPRPPCTTLASGRLRLTVLPEDRLQMKWRESDGSGLGYLVQVKPMAGDSEQE
VMLTTKSPKATVGGLSPSKGYTLQIFQLTGSGNVLLARREFVIEDLKSNSVSRSSRRPLG
AALGPTPSHVGSPDPEPPVTVVPSQDPPSLGVPSEEQPPPRGPGGKAPAQPSPDLERQSH
ARASVGRREKPAVPQFRCMPPTPADMIFLVDGSWSIGHSHFQQIKAFLASVIEPFEIGPD
KVQVGLTQYSGHPQTEWDLNAFGTKEEVLGAVQHLHYKGGNTFTGLALTHVLQENLKPTA
GPRPEAAKVVILVTDGKSQDDVHTAGCVLKDLNIDVFAVGVKNADEAELRLLASQPLDIT
VHNVQDFPQLSTLAGLLSRLICQKVQGRRLHGGPAKPASAAPALDPLSTPTSLVLSQVTS
SSVHLSWTPAPQPPLKYLVVWRPSRGGIPREVVVEGPSSSTELHNLTSSTEYLVSVFPVY
EAGAAEGLRGLVTTAPLPPPQALTLATVTPRTVRLTWQPSSGATQYLVRCAPAAPKGEEE
GREVRVRLPEVVLDGLEPARDYDLWVQSLRGAEASEARGIRARTPPPAPPRHLAFSDVSH
DSARVSWEGTPRPVRLFRVSYVSSEGGHSGQTEAPGNATSAILGPLSSSTTYTVRVTCLY
PGGSSSTMTGRLTTRKVPSPSQLSVTELPGDEVRLEWAAAAASGVLVYQIKWTPLGDGKA
HEISIPGNLGTAVLPVGRHSEYEITILAYYRDGARSDPVSLRYTPLSRSPPSNLALASKS
PSSLQVSWTPPSGRVLHYRLTYALASGSGPEKSVTVPGPTSHVTLPDLMAATKYRVLVSA
VYGAGESTAVSATGRTAACPALHPDGSLAGFDLMAAFGLVQEEYASIRGVAMEPSAFGPT
RTFTLFKDAQLTRRTSDIHPAALPPEHTVGFLVRLLPDTPREAFALWQMTAEDLRPVLGV
LLDASRKSLTYFSHDPRAALQEVTFDLPEVRKIFFGSFHKVHVAVGRSKVQLYVDCRKVA
ERSIGETGSPPSTGFVTLGRLAKARGPRSSSATFQLQMLQIICSDTWAEEDRCCELPGAK
EGETCPALPSACPCSWQTPGPPGPQGPPGLPGRNGAPGQQGFPGPRGEPGPPGQTGPEGP
GGQQGSPGTQGRAVQGPVGPPGIKGEKGDHGLPGLQGHPGHQGAPGKVGLQGPKGMRGLE
GTAGLPGPPGPRGFQGMAGARGTSGEQGPPGAVGPTGLPGPKGERGEKGEPQSLATIYQL
VSQACESAIQTHMLKFDSFLHESTRPPMPILEAPRPPGVSSDIQLPGEGGHGGPRPEDRG
EPGALSQVGTPGPQRKQPLGPPGRAGHSPCCPE
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atggtcccctctgatcccccagtggggccaaggcctccttgcaccactctggcgagcggc
cgcctgaggctgactgtgctgcccgaggaccggctgcaaatgaaatggagggagtcggac
gggagcggccttggctacttggtacaggtgaagcccatggcaggggactcggaacaggag
gtgatgctgaccaccaagagccccaaggccacggtcggaggcctgagcccctccaaaggg
tacaccctgcagatcttccagctcactggctcagggaacgtcctgctggctcggagggag
tttgtgattgaggatttgaagagtaactccgtgagcaggagcagccggaggccattgggg
gcagctctggggcccacaccctcccacgtggggagcccagaccctgagcccccagtcact
gtggtcccaagccaagacccgcccagtttgggtgtgcccagcgaggagcagcctcccccc
agaggccccggcgggaaggcccctgctcagcccagcccagatctggagaggcagagccac
gccagggcctccgtgggaaggagagagaagccggccgtcccccagttccgctgcatgccc
cccacgcctgcggacatgatattcctggtggacgggtcctggagcatcggccacagtcac
ttccagcagatcaaagccttcctggccagtgtcattgagccctttgaaatcgggccagac
aaagtccaagtaggcctgactcagtacagtggacaccctcagaccgagtgggacctgaac
gccttcggcaccaaggaggaggtgctgggcgctgtgcagcatcttcactacaaaggggga
aacacgttcacaggcctggccctgacccacgtgctgcaagagaacctgaagcccacagca
ggtccccgtccagaggcagccaaggtggtgattctagtgacagacggcaagtctcaggac
gatgtccacactgctggttgcgtcctcaaggacctgaacattgacgtctttgctgtgggc
gtgaagaacgccgacgaggccgagctgaggctcctggcatcccagccgctggacatcaca
gtccacaatgtgcaggacttcccccagctcagcacgctggccggcctactcagccgcctc
atctgtcagaaggtccagggcaggaggctgcatgggggcccagccaaaccagcctcagcc
gctccggccctggaccccctctccactcccaccagcctggtcctgagccaggtgacttcc
tccagcgtccacctgtcctggactccagccccacagccacccctcaagtacctggtcgtt
tggcggccttctaggggtggcatccccagggaggtggtggtggaggggcctagctcgtcc
acggagctgcacaacctgacctccagcacggagtacctggtgtccgtgttccctgtgtac
gaggcgggggcagcagagggcctgcggggcctggtgacaacagcacccctgcctccaccc
caggcgctcaccctggccacagtgacacccagaactgtccgtctcacctggcagccttcg
tctggagctacccagtacctggtgcggtgtgcacctgccgcccccaagggggaggaggag
ggcagagaggtgcgggtgaggctgccagaggtagtactggatggcctggaacccgcccgg
gactacgacctctgggtgcagagtctgaggggagcagaagccagcgaggcccggggcatc
cgtgccaggaccccacccccggcccccccgagacacctggccttctcggatgtgagccat
gactcagcccgtgtgtcctgggagggcaccccaaggcctgtgcgcctgttcagggtcagc
tatgtgtccagcgagggcggccactctgggcagacggaagctcctgggaatgccacctca
gccattctgggccccctgtcctcctctaccacgtacaccgtccgtgtcacctgcctgtac
cccgggggcagctcttccacgatgactgggcgcctgaccacacggaaagtccccagcccg
agccagctgtcagtgacagagctccctggggacgaggtccggctggagtgggcggctgca
gcggcctctggtgtgctcgtctaccagatcaagtggacacccctgggagatgggaaggcc
catgagatatccatcccggggaatctgggcacggccgtcctgcccgtgggaaggcactcg
gagtacgagatcaccatccttgcctactacagggacggggcccgcagcgaccctgtgtcc
ctccgctacacccccctcagcaggagcccgccctctaacttggccctggcgtccaagtca
cccagcagcctgcaggtcagctggacacccccaagtggccgtgtcctgcattaccggctc
acgtacgcactggcctcgggctcaggacccgagaaatcggtcactgttccaggacccaca
agccacgtgacactccccgacctgatggcagccaccaaatacagggtcctggtctcagca
gtctatggagcaggggagagcacggcagtgtctgccacgggccggacagcagcctgcccg
gccctccacccagacggctccctagcaggctttgacttgatggccgcctttggcctggtg
caggaagagtacgcctccatccgtggcgtggccatggagccctcggcatttggcccgacc
agaaccttcaccctgttcaaggacgctcagctgacgcgcaggaccagtgacatccacccg
gccgccctccccccggagcacacggtgggcttcctggtacgcctgctccccgacacgccc
cgtgaggccttcgcactgtggcagatgacagccgaggacctccggcccgtgctgggcgtc
ctgctggatgccagcagaaagtccctgacctacttcagccacgaccccagggcggcctta
caggaagtgaccttcgatctgcccgaagtgaggaagatattctttgggagcttccacaag
gtgcacgtggccgtgggccgctccaaggtccagctctatgtggactgccggaaggtggct
gagaggtccattggggagaccggcagcccaccctccaccggcttcgtcacgctggggagg
ctggccaaggcccggggcccccggagcagctcagccacgttccagctccagatgctgcag
atcatatgcagtgacacctgggcagaggaggacaggtgctgcgagctccctggggcgaag
gaaggagagacctgccctgccttgccttctgcctgcccgtgttcctggcagacccctggg
ccccccgggccccagggacctccgggcctccccgggaggaatggagcccctggacagcag
ggcttccctgggcccaggggagagcctgggccacctgggcagacaggacctgagggtccc
ggaggtcagcagggctcaccagggacccagggccgagccgtccagggacctgtggggcct
ccaggtatcaaaggagagaagggggaccatggactcccaggtctacagggccaccccggc
caccagggcgcccctgggaaggttggcctccagggaccaaagggaatgagaggtctggag
ggcactgctggcctgcccggaccccctggccccaggggcttccagggcatggcaggggcc
cgggggaccagtggggagcaaggacccccaggggctgtggggcccacggggctgccaggg
cccaagggggaacgaggagaaaagggcgagccacagtccctggccaccatctaccagctc
gtgagccaggcctgcgagtctgccatccagacacacatgctgaagttcgactccttcctc
catgagagcaccaggccccccatgcccatcttggaggcccccaggccccctggcgtgagc
agtgacatccagcttcctggagaagggggacatggtggcccccgccctgaagacagaggt
gagcctggagccctcagtcaggtgggcacccctgggccacagaggaagcagcctctggga
ccccctggacgagcaggacattctccgtgctgccccgagtga
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