Rhinolophus ferrumequinum (greater horseshoe bat): 117017308
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Entry
117017308 CDS
T07722
Symbol
ATXN2
Name
(RefSeq) ataxin-2 isoform X1
KO
K23625
ataxin 2/2L
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq05014
Amyotrophic lateral sclerosis
rfq05017
Spinocerebellar ataxia
rfq05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
117017308 (ATXN2)
05017 Spinocerebellar ataxia
117017308 (ATXN2)
05022 Pathways of neurodegeneration - multiple diseases
117017308 (ATXN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfq03019
]
117017308 (ATXN2)
Messenger RNA biogenesis [BR:
rfq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117017308 (ATXN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
Motif
Other DBs
NCBI-GeneID:
117017308
NCBI-ProteinID:
XP_032953254
Ensembl:
ENSRFEG00010008747
LinkDB
All DBs
Position
25:complement(6813291..6924877)
Genome browser
AA seq
1141 aa
AA seq
DB search
MSLKPQQQQQQQQQPPPPAAASARKPGGGLLSSPAAAPSPSSPSVSSSSAAASSSAAAAS
AGGGRPGLGRGRNNSKGLPQSSISFDGIYANMRMVHILTSVVGSKCEVQVKNGGIYEGVF
KTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYARRDAFT
DSAISAKVNGEHKEKDLEPWDAGELTTNDELEALENDVSNGWDPNDMFRYNEENYGVVST
YDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAV
QRNSSEREGHSINTRENKYIPPGQRNREVISWGSGRQNSPRMGQPGSASMPSRPTSHTSD
FNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSR
PPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVAHTP
PSEAAAPPAARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTPSGPVLASPQAGI
IPTEAVAMPVPAASPTPASPASNRAVTPSIEAKDPRLQDQRQNSPAGNKENMKPSETSPS
FSKAENKGISPIVSEHRKQIDDLKKFKNDFRLQPSSTSESMDQLLNKNREGEKSRDLIKD
KIEPNAKDSFIENSSSNCTSGSSKPNSPSLSPSILSNTEHKRGPEVTSQGVQTSSPGCKQ
DKDDKEEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQP
TPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQRQDQHH
QSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVMQG
NARMMAPPAHAQPALVSSSAAQYGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQ
YAHPNAPLHPHTPHPQPAATPTGQQQGQHGGSHPAASPVQHHQHQAAQALHLASPQQQSA
IYHAGLAPTPPSMTPASNTQSPQNSFPTAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQ
SGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQ
L
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgaagcctcagcagcagcagcagcagcagcagcagccaccgccgcctgcggcc
gctagtgcccgcaaacccggcggcggccttctctcgtcgcccgccgccgcaccgtcgccg
tcctcgccctcagtctcgtcgtcctcggccgcggcttcctcctccgcagcggcggcgagc
gcaggcggcgggcggcccggcctgggcagaggtcgaaacaatagcaaaggactgcctcag
tcttcgatttcttttgatggaatctatgcaaatatgaggatggttcatatacttacgtca
gttgttggatccaaatgtgaagtacaagtgaaaaacggaggtatatatgaaggagttttt
aaaacatacagtcctaagtgtgatttggtacttgatgctgcacatgagaaaagtacagaa
tctagttcggggccaaaacgtgaagaaataatggagagtattttgttcaaatgttcagac
tttgttgtggtacagtttaaagatatggactccagttacgcaagaagagatgcttttact
gactctgctatcagtgctaaagtgaatggggaacacaaagagaaggacctggagccctgg
gatgcaggtgaactcactaccaatgatgaactggaagctttggaaaatgacgtttctaat
ggatgggatcccaatgatatgtttcgatataatgaagaaaattatggtgtagtgtctaca
tatgatagcagtttatcttcatatacggttcccttagaaagggataattcagaagaattt
ttaaaacgagaagcaagagcaaaccaattagcagaagaaattgaatcaagtgcccagtac
aaagcccgggtggccctggaaaatgatgataggagcgaagaagaaaaatacacagcagtt
cagagaaattccagtgaacgtgagggccacagcataaacactagggaaaataaatatatt
cctcctggacaaagaaatagagaagtcatatcctggggaagtgggagacagaattcgccg
cgtatgggccagcctggatcggcctccatgccatcaagacccacctctcacacttcagat
ttcaatccgaattctggttcagaccaaagagtagttaatggaggtgttccctggccatcg
ccttgcccatctccttcctctcgcccaccttctcgctaccagtcaggtcccaactctctt
ccacctcgggccgccacccctacacggccgccctccaggcccccctcgcggccatccaga
cccccgtctcacccctctgctcatggttctccagctcctgtctctactatgcctaaacgc
atgtcttcagaagggcctccaaggatgtccccaaaggcccagcgacaccctcgaaatcac
agagtttctgctgggaggggttccatttccagtggcctagaatttgtagcccatacccca
ccaagtgaagcagctgctcctccggcagcacggaccagtcccgcagggggcacgtggtca
tccgtggtcagtggggttcccagattatcccctaaaactcacagacccaggtctcccaga
cagaacagtattggaaatactcctagtggaccagttcttgcttctccccaagctggtatt
attccaactgaagctgtagcaatgcccgttccagctgcatctcctacgcctgccagtcct
gcatccaacagagctgttaccccatctattgaggctaaggatcccaggcttcaagatcag
aggcagaactctcctgcagggaataaagaaaatatgaagcccagtgagacatcacctagc
ttctcaaaagctgaaaataaaggtatctcaccaattgtttctgagcatagaaaacagatt
gatgacttaaagaaatttaagaatgattttaggttacagccaagttctacttctgaatct
atggatcaactgctaaacaaaaatagagagggagaaaaatcaagagatttgatcaaagac
aaaattgaaccaaatgctaaggattctttcattgaaaatagcagcagcaattgcaccagt
ggcagcagcaagccgaacagccccagcctttccccctcaatcctcagtaacacggagcac
aagaggggacctgaggtcacgtcccaaggggttcagacttctagtccaggatgtaaacaa
gacaaagatgataaagaggagaagaaagacgcagctgagcaagtgaggaaatcaacattg
aatcccaatgcaaaggagttcaaccctcgttctttttctcagccaaagccttctaccacc
ccaacgtcgcctcgtcctcaagcacaaccgagcccatctatggtgggtcatcagcagcca
actccagtttatacgcaacctgtttgttttgcaccaaatatgatgtatccggtcccagtg
agcccaggcgtgcaacctttataccctatacctatgacgcccatgccggtgaatcaagcc
aagacttatagagcaggtaaagtaccaaatatgccccaacagcggcaagaccagcatcat
cagagtaccatgatgcacccagcctcagcagcaggccccccaattgtggccaccccacca
gcctattccacacaatacgttgcctatagtcctcagcagtttccaaatcagcctcttgtt
cagcacgtgccacattatcagtctcagcaccctcacgtctacagtcctgtaatgcagggt
aacgctagaatgatggcaccgccagcacatgcccagcctgctttagtgtcttcttcagca
gctcagtacggggctcatgagcagacgcatgcaatgtatgcatgtcccaaattaccatac
aacaaggagacaagcccttctttctactttgccatttccactggctcccttgctcagcag
tatgcgcaccctaatgctcccctgcacccacatactccacatcctcagcccgcagctacc
cccactggacagcagcaaggccagcatggtgggagccaccctgcagccagtcccgttcag
caccatcagcaccaagccgcccaggctctccatctggccagtccacagcagcagtcagcc
atttaccacgcggggcttgcaccaaccccaccttccatgacacctgcctccaatacgcag
tcgccacagaatagtttcccaacagcacaacagaccgtctttacgattcatccttctcat
gttcagccggcgtacaccaatccaccccacatggcccacgtacctcaggctcatgtacag
tcaggaatggttccttctcatccaactgcccatgcgccaatgatgctaatgacgacacag
ccacccggcggtccccaggccgccctcgctcaaagtgcactacagcccattccagtctcg
acaacagcgcatttcccctatatgacgcacccttcagtacaagcccaccaccaacagcag
ttgtaa
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