Rhinolophus ferrumequinum (greater horseshoe bat): 117018102
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Entry
117018102 CDS
T07722
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117018102 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rfq03000
]
117018102 (CNOT4)
03019 Messenger RNA biogenesis [BR:
rfq03019
]
117018102 (CNOT4)
04121 Ubiquitin system [BR:
rfq04121
]
117018102 (CNOT4)
Enzymes [BR:
rfq01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117018102 (CNOT4)
Transcription factors [BR:
rfq03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117018102 (CNOT4)
Messenger RNA biogenesis [BR:
rfq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117018102 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117018102 (CNOT4)
Ubiquitin system [BR:
rfq04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117018102 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
DZR_2
Rtf2
Nup35_RRM_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
117018102
NCBI-ProteinID:
XP_032954765
Ensembl:
ENSRFEG00010010344
UniProt:
A0A671EUT9
LinkDB
All DBs
Position
26:12454633..12568125
Genome browser
AA seq
714 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGENSQQIPNSDTP
SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
PSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAPANANSLSSTFSVLPQRFPQFQ
QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
IADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSACPSNANSHSAPTSNTATTDSLS
WDSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAA
FSTQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagtcctgatgcgaaggaagaccctgtggaatgtcctctttgcatggagccc
ttggagatagatgatatcaattttttcccttgcacctgtggctaccagatttgccgattt
tgttggcatcgaattcgcactgatgaaaatgggctttgtcctgcatgtagaaagccatat
ccagaagacccagcagtttataaaccactctcccaggaggaactgcaaaggataaagaat
gagaagaaacagaaacaaaatgagagaaaacagaaaatatcggaaaatcgcaaacatttg
gctagtgtacgtgttgtacaaaaaaacctcgtctttgttgtaggcctgtctcagcgccta
gcagatccagaggttttaaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggatcacagggtccaagtgccagtgcttat
gtaacctacatccggtcagaagatgctctcagagccatacagtgtgtcaacaatgtggtg
gtagatggcagaacacttaaggcatctctaggtacaacaaaatactgcagttacttttta
aagaatatgcagtgtccaaagcctgactgcatgtatctacatgaattgggggatgaggcc
gccagcttcacaaaagaggaaatgcaggcaggtaaacaccaagaatatgaacagaagcta
cttcaagaattatataaattaaaccccaattttcttcaactatctacgggttcagttgat
aagaataaaaacaaagtgacaccactgcagaggtatgatactcccattgacaaaccttca
gattctctcagtatagggaatggtgaaaattcccagcagatacctaacagtgatacgcct
tcaccaccacctggtttatcaaaatctaacccagtcatccccatcagctcatccaatcac
agcgcacggtctccttttgaaggggcagtaactgagtcacagtcgttattctcagataac
ttccgacatcccaaccctattccgagtgggcttcctcctttccccagctccccccagacc
cccagtgactggcctacagcaccagagccacagagcctcttcacatcagaaacaatccca
gtatcatcttctacagactggcaagcagcgtttggctttggttcttctaaacaaccagag
gatgacttgggttttgatccctttgatgtcactcgaaaagccttagcagacctgattgaa
aaggaactgtcagtccaagaccagccctccctttcgcccacatctcttcagaactcctct
tcacacactacaaccgccaaaggcccgggctctggattcctgcatcctgctgcacctgca
aatgccaactctctcagtagtaccttttcagtcttgccacagaggttccctcaatttcag
cagcaccgagcggtttataattcattcagttttccaggccaggcagcccgctatccttgg
atggcctttccacgcaatagcatcatgcacttgaaccacacagcaaaccccacctcaaat
agtaatttcttggacttgaatctcccgccacagcacaacacaggtctgggagggatccct
atagcagacaacagcagttctgtagagagtttaaatatgaaggaatggcaggacgggcta
agggcacttctccccaacattaacatcaactttggtggactgcccaattctgcctgcccc
tccaacgccaacagccacagtgcaccaacgtccaacactgccaccaccgacagcctgagt
tgggacagccctggcagctggacagacccagccatcatcacaggtattccagcctcttca
ggaaacagtttagactctcttcaagatgacaatcctccacactggctaaaatccctccag
gccctcacagagatggacggccccagtgctgctccatcacagacccaccacagcgccgcc
ttcagcacacagatccctctgcacagagccagttggaatccctaccctcctccttcaaat
ccttccagcttccactccccacccccaggctttcagacggccttcagaccccccagcaaa
acccccacagatttactacagagttcaacactggaccgccattag
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