Rhinolophus ferrumequinum (greater horseshoe bat): 117019160
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Entry
117019160 CDS
T07722
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03013
Nucleocytoplasmic transport
rfq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117019160 (UPF2)
03015 mRNA surveillance pathway
117019160 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfq03019
]
117019160 (UPF2)
Messenger RNA biogenesis [BR:
rfq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117019160 (UPF2)
mRNA cycle factors
P-body specific factors
117019160 (UPF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
117019160
NCBI-ProteinID:
XP_032956545
Ensembl:
ENSRFEG00010018638
UniProt:
A0A671FQV5
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All DBs
Position
5:complement(16751097..16848447)
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AA seq
1272 aa
AA seq
DB search
MPAERKKPASMEEKESLLNNKEKDCGERRPVNSREKPKDEIKLTAKKEVIKVPEDKKKKL
EEDKRKKEDKERKKKEEEKVKVEEELKKKEEEEKKKHDEEERKKQEEQAKRQQEEEAAQL
KEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLLPRKVKSAAEKFNLTFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKNCQNKESNKDDSKAEAKEPKDNKEVSNPDDLELELENLEINDDTLELESTDEA
EDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKAN
RKKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINI
ETKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPES
HLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLY
KDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQED
VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG
VNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLE
VWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSK
DSLTEGENLEEDDEEEEGGAETEEQSGNESEVNEPEEEEGSDNDEDEGEEEEEENTDYLT
DSNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDV
AIPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWN
QQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPN
ADLIFKTGGRRR
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaatctttgctgaacaac
aaggaaaaagactgcggtgaaaggcggccagtgaacagcagggagaaaccaaaagatgag
atcaagctcactgccaagaaggaggttattaaggtccctgaagataaaaagaagaaactg
gaagaagataagagaaaaaaagaagataaggaacgtaagaaaaaagaagaagaaaaggtg
aaggtagaggaggaattaaagaaaaaagaggaagaagaaaaaaagaaacatgatgaagaa
gagagaaagaagcaggaagaacaggcaaaaagacagcaagaggaagaagctgcccagttg
aaagagaaggaggaatcccttcagcttcatcaggaggcttgggaacgacatcagttaagg
aaggaacttcgtagcaaaaaccaaaatgctccagacaatcgaccagaggaaaatttcttt
agccgactagactcaagtttgaagaaaaatactgcttttgtcaagaaactaaaaactatt
acggaacaacagagagactccttgtcccatgattttaatggcctaaatttaagcaaatac
attgcagaagctgtagcttctattgtggaagcaaagctaaaaatatctgatgtgaattgt
gctgtgcacttatgctctctctttcaccagcgctatgccgactttgccccgtcacttctt
caggtttggaaaaaacattttgaagcaaggaaagaagagaaaacacctaacattaccaaa
ttaagaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtctatctttaatctatgaacagctaaaaaatattattaatgctgatcgggaatcc
catactcatgtttctgtggtgattagtttttgtcgacattgtggagatgatattgctgga
cttctaccaaggaaagtaaagagtgctgcggagaagtttaatttgacttttcctcctagt
gagataattagtccagagaaacaacaacctttccagaatcttttaaaagaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacagaatactgagagacaaaac
aggcgtattctacattctaaaggggagctaagtgaagatagacataaacagtatgaagaa
tttgctatgtcttatcagaagctgctggcaaattctcagtccttagcagaccttttggat
gaaaatatgccagatcttcctcaggacaaaccaacaccagaagagcatgggcctggaatt
gatatatttacacctggtaaacctggagaatatgacttggaaggtggtatatgggaagat
gaagatgctcggaatttttatgaaaacctcattgatttgaaggcttttgttccagccatc
ctgtttaaagataatgaaaaaaattgtcagaataaagagtccaacaaagatgattccaaa
gcagaggcaaaagaacctaaggataacaaagaggtatcaaatcctgatgatttggaactt
gagttggagaacctagaaattaatgatgacaccttagagctagagagtacggatgaagct
gaagatcttacaaagaaacttcttgatgagcaagaacaagaggatgaagaagccagcacc
ggatctcatctcaagctcatcgtagatgctttcctccagcaattgcccaactgtgtcaac
agagatctgatagacaaggcagcaatggatttttgcatgaacatgaacacaaaagcaaat
aggaagaagttggtccgggccctctttatagttcccaggcaaaggttggatttgctacca
ttttatgcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggacctt
tgttccatgctgaggggggatttcagattccatgtacgaaaaaaggaccagatcaatatt
gaaacaaagaacaaaactgttcgttttattggagagctgactaagtttaagatgttcaca
aaaaatgatacattacattgtttaaagatgcttctatcagacttttcccatcaccatatt
gaaatggcatgtaccctcctggaaacatgtggaagatttcttttcagatctccagaatct
cacttgaggaccagtgtacttttggaacaaatgatgagaaagaaacaagcaatgcatctc
gatgcaagatatgtcacaatggtagagaatgcatattactactgcaacccacctccagct
gaaaaaacagtgaaaaagaaacgtcctcctctccaggaatatgtccggaaacttttatac
aaggatctctccaaggttaccactgagaaggttttgagacagatgcgaaagttaccctgg
caggaccaagaagtgaaagactatgtaatttgttgtatgataaacatctggaatgtgaaa
tataatagtattcattgtgtagccaacctcttagcaggcctggtgctctaccaagaggat
gtcgggatccatgttgtggatggcgttttagaagacattcggttaggaatggaggtaaat
caacctaaatttaatcagagacgtatcagcagtgccaagttcttgggggaactttataat
taccgaatggtggaatcggctgttatttttagaactctttattcttttacttcatttggt
gttaaccctgatggctctccaagttcactggaccctcctgagcaccttttcagaattaga
ctagtgtgcactattttggatacctgtggccagtactttgacagaggttccagtaaacga
aaactcgattgcttccttgtgtattttcagcgttatgtttggtggaagaaaagtttggag
gtttggacaaaagaccatccatttcctattgacatagattacatgatcagtgatacacta
gaactgctaagaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggta
caagacttggaacgagaattcttaataaaactaggcctagtaaatgacaaagattcaaaa
gattctttgacagaaggagaaaatcttgaagaggatgatgaagaagaagaaggaggagca
gaaacagaagaacaatctggaaatgaaagtgaagtaaatgaaccagaagaagaggagggt
tctgataatgatgaggatgaaggagaggaagaagaggaagagaatacagattaccttaca
gattcaaacaaggaaaatgaaactgatgaagaaaatactgaggtaatgatcaaaggaggt
gggctgaagcatgtaccgtgtgcagaagatgaggacttcattcaagctctggataaaatg
atgctagaaaatcttcagcaacgaagtggcgaatctgttaaagtacatcaacttgatgtt
gctattcccttgcatctcaaaagccagctgagaaaagggcccccactcggtggtggggag
ggagaggccgagtctgcagataccatgccgttcgtcatgttaacaagaaaaggcaataaa
cagcagtttaagatccttaatgtgcccatgtcttcccaacttgctgcaaatcactggaac
cagcagcaggcagaacaagaagagaggatgagaatgaaaaagctcacactggatatcaat
gaacggcaagaacaagaagattatcaagaaatgctgcagtctcttgcccagcgcccagct
ccagcaaacaccaatcgggagcggcggccacgataccagcacccaaagggagcgcctaat
gcggatctaatctttaagactggtgggaggagacgttga
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