Rhinolophus ferrumequinum (greater horseshoe bat): 117019289
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Entry
117019289 CDS
T07722
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117019289 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rfq03041
]
117019289 (SNRNP200)
Enzymes [BR:
rfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117019289 (SNRNP200)
Spliceosome [BR:
rfq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117019289 (SNRNP200)
Complex C
U5 SnRNP specific factors
117019289 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
117019289
NCBI-ProteinID:
XP_032956772
Ensembl:
ENSRFEG00010017855
UniProt:
A0A671FUL1
LinkDB
All DBs
Position
13
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVVSGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLSKKVVLLTGETSTDLKLLGKGSVVISTPEKWDILSRRWK
QRKNVQNISLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSAMERRLVEQLFSSGAIQVVVASRSLCWGMSVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPL
RHHEDSLLRQLAQKVPHKLNNPKFNDPHIKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLSDSQMADVARFCNRYPNIELSYEVVEKDAIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgaccgcccgtagcctgcagtacgagtacaaggcgaactcgaatcttgtc
ctccaagctgaccgctctctcatcgaccggactcgccgggatgaacccacaggagaggtg
ctgtccctggttgggaagttggagggcacccggatgggagataaggctcaacggaccaaa
ccacagatgcaggaggaaagaagagccaagcgaaggaagcgtgacgaggaccggcacgac
atcaacaagatgaaggggtacacgctgctgtcggagggcatcgacgagatggtgggcatc
atctacaagcccaaaacgaaggagacccgggagacctatgaggtgctgctcagcttcatc
caggctgctcttggggaccagccacgtgatattctttgtggggcagctgatgaagttctg
gctgtcctaaagaatgaaaagcttcgtgacaaggaaaggagaaaggagattgacctgctg
ctgggtcagacagatgataccagataccacgtgctagtgaacttgggcaaaaagatcaca
gactacggtggagacaaggagatccagaacatggacgacaacattgatgagacatacggg
gtgaatgtacagtttgagtctgatgaggaggaaggcgatgaagatgtgtatggagaggtt
cgagaagaggcgtctgatgatgacatggaaggggatgaggctgtggtgcgctgcaccctc
tcggccaatctcgtagtctccggtgaactgatgagctccaagaagaaggacctgcaccct
cgggacattgacgcgttctggctacaacggcagctcagtcgcttctacgacgatgccatc
gtgtcgcagaagaaggcagatgaagtgttggagatcttgaagacggccagtgatgaccgg
gagtgtgagaaccagctggtgctgctccttggtttcaacacattcgattttatcaaagtt
ctgcgtcagcacaggatgatgattttgtactgcactttgctggccagtgcacagagcgaa
gctgaaaaggagaggattatggggaagatggaagctgacccagagctctcgaagttcctc
taccagctccacgaaaccgagaaggaggatctgatccgggaggagcggtcccgaagggag
cgagtgcggcagtcccggatggacacggacctggaaaccatggatctggaccagggcgga
gaggctctggctccacggcaggttctcgacttggaggacctggtttttacccaagggagc
cacttcatggccaataaacgctgccagcttccggatggatccttccgtcgccagcgtaag
ggttacgaagaggtgcatgtgcctgctctgaagcccaagccctttggctcagaggaacaa
ctgcttccagtggagaagctgcccaagtacgcccaggccggattcgagggcttcaaaaca
ctgaaccggatccagagcaagctctaccgggcagccctggagaccgacgagaacctgctg
ctgtgtgcccccaccggtgccgggaagaccaatgtggcgctgatgtgcatgctccgagag
atcgggaagcacatcaacatggacggcaccatcaacgtggatgacttcaagattatctac
atcgctcccatgcgctctctggtgcaggagatggtgggcagctttggaaagcgcctggcc
acgtacggcatcactgttgcagagctgaccggtgaccaccagctgtgcaaggaggagatc
agtgccactcagatcatcgtctgcacccccgagaagtgggacatcatcacccgcaagggc
ggggagcgcacctacacccagctcgtgcggctcatcattctggatgagatccaccttctc
cacgatgacagaggtcctgtcttggaagctttggtggctagggccatccgaaacattgag
atgacccaagaggacgtcaggctcattgggcttagtgccaccctccccaactatgaggat
gtggccactttcctgcgcgtcgaccctgccaagggcctcttctacttcgacaacagcttt
cgcccagtgcctctggaacagacttatgtgggcatcacggagaaaaaagctatcaagcgt
ttccagatcatgaatgaaatcgtctatgagaagatcatggaacatgctggaaaaaatcag
gtgctggtgttcgtccattctcgaaaggagacggggaagacggctagggccatccgggac
atgtgcctcgagaaggacactctgggtctgttcctcagagaaggctctgcctccacagaa
gtccttcggacggaagctgagcagtgcaagaacctggagctaaaggaccttctgccctat
ggctttgccatccatcatgcgggcatgaccagagttgaccggacgcttgtggaggacctc
tttgcggataaacacattcaggttttggtgtccacagcaacgctggcttggggtgtgaac
ctccccgcacatacagtcatcatcaaaggcacccaggtgtacagtcccgagaaggggcgc
tggacagaactgggggcactggacatcctgcagatgctgggacgcgctgggagaccccag
tatgacaccaagggtgaaggcatactcatcacgtctcacggggagctccagtactacctg
tcgctcctcaaccagcagcttcccatcgagagccagatggtgtccaagctgcccgacatg
ctcaatgcggaaatcgtgctggggaacgtccagaacgcaaaggacgcggtgaactggctg
ggctacgcctacctgtacatccgaatgctccggtccccaaccctctacggcatctctcac
gatgacctcaagggagaccccttgctggaccagcgccgactagatctggttcatactgct
gccttgatgctggataagaacaacctggtcaagtatgacaagaagacaggcaacttccag
gtgacagagctgggccggatagccagccattactacatcaccaacgacacagtgcagacg
tacaaccagctgctgaagcccacgctgagtgagatcgagctcttccgagtcttctcgttg
tcctccgagttcaagaacatcaccgtcagagaggaggagaagctggagctgcagaagctg
ctggagagggtgcccatcccggtaaaggagagcatcgaggagcccagtgcgaagatcaat
gtgcttctccaagccttcatctcgcagctgaaattggagggctttgcactgatggccgac
atggtgtatgtcacacagtcggcaggccggttgatgcgggccatctttgaaattgtcctg
aaccgaggttgggcgcagcttacagacaagaccctgaacctctgcaagatgatcgacaaa
cgcatgtggcagtccatgtgtcctctgcgccagttccggaaactccctgaggaagtagtg
aagaagattgagaagaagaacttcccctttgagcgtctgtatgacctgaatcataatgag
atcggcgagctcatccgcatgccgaagatgggcaagaccatccacaagtacgtccacctg
ttccccaagctggagctgtcggtacacctgcagcccatcacgcgctccaccctgaaggtg
gagctgaccatcacgccggacttccagtgggacgaaaaggtccatggttcgtcagaggcg
ttctggatcctggtggaggacgtggacagtgaggtgattctgcaccatgagtacttcttg
ctcaaggccaagtatgcccaggacgagcacctcatcacgttcttcgtgcccgtctttgag
ccgctgccccctcagtacttcatccgtgtggtgtctgaccgctggctctcttgtgagacg
cagctgcccgtctccttccgccacctgatcctgcccgagaagtacccgccacccaccgag
ctgctggacctgcagcccttgcccgtgtctgccctgagaaacagcgccttcgagagcctt
taccaggataaatttcctttcttcaaccccatccagacccaagtgttcaacaccgtgtac
aacagtgatgacaacgtgtttgtgggggcccccacgggcagtgggaaaaccatctgcgct
gagttcgccatcctgcggatgctgttgcagaactccgaggggcgctgtgtctacatcacc
cccatggaagcgctggcagagcaggtgtacatggactggtacgagaagttccaggaccgg
ctgagcaagaaggtggtgctgctgacgggcgagaccagcacagacctgaagctcctgggc
aaaggcagcgtcgtcatcagcacccctgagaagtgggacatcctgtcccggcgctggaag
cagcgcaagaacgtccagaacatcagccttttcgtggtggacgaggtccacctcatcggg
ggcgagaatgggcctgtcttggaagtgatctgctcccggatgcgctacatctcctcccag
attgagcggcccatccggattgtggcacttagctcctcgctgtcaaacgccaaggatgtg
gcccactggctggggtgcagtgctacctctactttcaacttccacccgaacgtgcgcccc
gtgcccttggagctgcacatccagggcttcaacatcagtcacacgcagacgcgcctgctg
tccatggccaagcccgtgtaccacgctatcaccaagcactcgcccaagaagcctgtcatc
gtcttcgtaccgtctcgcaagcagacccgcctcactgccattgacatcctcaccacgtgc
gcggcggacatccagcggcagaggttcttacactgcactgagaaagacctgatcccatac
ctggagaagctgagtgacagcacgctcaaggagacgctgttaaatggtgtgggctacctg
cacgaggggctcagcgccatggagcggcgcctggtggagcagcttttcagctcaggggcc
atccaggtggtggtagcttctcggagtctctgctggggcatgagtgtggctgcccacctg
gtaatcatcatggacacacagtactacaatggcaagatccacgcgtacgtggactacccc
atctatgacgtgctgcagatggtggggcacgccaaccgccctctgcaggatgacgagggg
cgctgcgtcatcatgtgccagggctccaagaaggatttcttcaaaaagttcttatatgag
ccattgccagtagagtctcacctggaccactgtatgcatgaccacttcaatgctgagatt
gtcaccaagaccattgagaacaagcaggacgccgtggactacctcacgtggacctttctg
taccgccgcatgacacagaaccccaattactacaacttgcagggcatctcccaccgtcac
ctgtctgatcacctgtcagagctggtggagcagacgctgagtgacctggagcagtccaag
tgcatcagcatagaggacgagatggacgtggcgcccctgaacctgggcatgatcgctgcc
tactattacatcaactacaccaccatcgagctcttcagcatgtccctgaacgccaagacc
aaggtgcggggtctcattgagatcatttccaacgcggccgagtacgagaacatccccctg
cggcaccacgaggacagcctgctgcggcagctggctcagaaggtcccccacaagctgaac
aaccccaagttcaacgacccacacatcaagaccaacctgctcctgcaggctcacctgtcc
cgcatgcagctgagcgccgagctgcagtcagacacagaggagatccttagcaaggcgatc
cggctcatccaggcctgtgtggatgtcctctccagcaacggctggctcagccctgcgctg
gcagccatggagctggcccagatggtcacccaggccatgtggtccaaggactcatacctg
aaacagctgccacacttcacctcagagcacatcaaacgttgcacagacaagggagtcgag
agtgttttcgacatcatggagatggaggatgaagagcggaacgcgctgctgcagctgtcc
gacagccagatggcggacgtggcgcgcttctgtaaccgctaccctaacatcgagctgtcc
tacgaggtggtggagaaggacgccatccgcagtggcgggccggtcgtggtgctggtgcag
ctggagcgagaggaggaagtgacagggcccgtgatcgcgcctctctttccacagaaacgt
gaagagggctggtgggtggtgattggagatgccaagtccaatagcctcatctccatcaag
aggctgaccctgcagcagaaggccaaggtgaagctcgatttcgtggccccggccactggc
gcccacaactacactctgtacttcatgagtgacgcttacatgggatgtgaccaggaatac
aagttcagcgtggacgtgaaagaagctgagacagacagtgattcagactga
DBGET
integrated database retrieval system
