Rhinolophus ferrumequinum (greater horseshoe bat): 117019494
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Entry
117019494 CDS
T07722
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117019494 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfq03019
]
117019494 (PARN)
Enzymes [BR:
rfq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117019494 (PARN)
Messenger RNA biogenesis [BR:
rfq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117019494 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
T6PP_C
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
117019494
NCBI-ProteinID:
XP_032957141
Ensembl:
ENSRFEG00010015795
UniProt:
A0A671FE91
LinkDB
All DBs
Position
15
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AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLQKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGSLSYVSPNSSKCPVTIPEDQKKF
IDQVVEKIEDLLRSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
VSKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTACVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMADYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKHKEKQIKRKWPEESWKEVERKRLN
TPCISYALQNHCYRTNSPAATSTAGKRSLSPSLAEAGMEASVSGEISDPELEQTDSCAES
PSEGRKKAKKFKRMKKDLSPAGSVSDSSAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcaaaaagtgtaccaggccatagag
gaggcggacttctttgccatcgatggggagttttcaggaatcagtgatggaccttcagtt
actgcattaacaaatggttttgacacgccagaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatataacaaagtcatttaacttctatgttttcccgaaacctttcaatagatcc
tcaccagatgtcaaatttgtttgtcagagctcaagcattgactttctggcaagccaagga
tttgattttaataaagtttttcgcaatggaattccatatttaaatcaggaagaagaaaga
cagttaagagagcagtatgatgaaaaacgtttgcagtccaacggtgcaggatctctatct
tacgtgtctcccaactcatcaaaatgtcctgtgacgattcctgaggatcagaagaagttt
attgaccaagtggtagagaaaattgaagatttgttacgaagtgaagaaaacaagaacttg
gacttagagccgtgtactgggttccaaagaaaactaatttatcagacattgagctggaag
tatcccaaaggcatccatgttgaaactttagaaactgaaaagaaagagcgatacatagtt
gtcagcaaagtagatgaagaagaacgtaaaagaagagagcagcagaaacatgctaaagaa
caggaagaactgaatgatgctgtgggattttctagagtcattcatgccattgctaattcg
ggaaagcttgttattggacacaacatgctcttggatgtcatgcacactgttcatcagttc
tactgccctctgcctgcggacttaaatgagtttaaggagatgacagcatgtgttttcccc
agactcttggatactaaattgatggccagcacacaacctttcaaggatatcatcaacaac
acatcccttgcagaattggaaaagcggttaaaagagacacctttcaaccctcctaaagtt
gaaagtgcagaaggttttccgagttatgacacagcttctgaacagctccacgaagcaggc
tatgatgcttatatcacaggactgtgtttcatctccatggcagactacctaggttctttt
cttagtcctccaaagattcatgtgtctgccagatcaaaactcattgaacctttttttaac
aagttatttcttatgagagtcatggatatcccatatctaaacttggaaggaccagacttg
cagcctaaacgtgatcatgttctccatgtgacattccccaaagaatggaaaaccagcgac
ctttaccagcttttcagtgcctttggtaacattcagatatcctggattgatgacacatca
gcatttgtttctctcagccagcctgaacaagtacaaattgctgtcaataccagcaaatat
gcagaaagctatcggatccagacgtatgctgaatatgtggggaaaaaacacaaggagaag
cagatcaagagaaagtggccagaagagagctggaaggaggttgagagaaagcggttgaac
actccatgtatatcctacgctctgcagaatcactgttaccgcaccaatagccctgcagct
accagcacagcagggaagagaagtctgagtcccagtctagccgaagctggcatggaggcc
agtgtgtctggggagatttctgaccctgagcttgagcagaccgattcctgtgcagaatcg
ccctcagagggaaggaaaaaggccaagaagtttaaaagaatgaagaaggacctttctcca
gcaggaagcgtctcggacagctccgccaagctctttgaagttcctgacacgtggtaa
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