Rhinolophus ferrumequinum (greater horseshoe bat): 117020770
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Entry
117020770 CDS
T07722
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq04120
Ubiquitin mediated proteolysis
rfq04137
Mitophagy - animal
rfq04141
Protein processing in endoplasmic reticulum
rfq05012
Parkinson disease
rfq05014
Amyotrophic lateral sclerosis
rfq05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117020770 (PRKN)
04120 Ubiquitin mediated proteolysis
117020770 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117020770 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
117020770 (PRKN)
05014 Amyotrophic lateral sclerosis
117020770 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
117020770 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rfq04131
]
117020770 (PRKN)
04121 Ubiquitin system [BR:
rfq04121
]
117020770 (PRKN)
03029 Mitochondrial biogenesis [BR:
rfq03029
]
117020770 (PRKN)
Enzymes [BR:
rfq01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
117020770 (PRKN)
Membrane trafficking [BR:
rfq04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
117020770 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
117020770 (PRKN)
Xenophagy
Other xenophagy associated proteins
117020770 (PRKN)
Ubiquitin system [BR:
rfq04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
117020770 (PRKN)
Mitochondrial biogenesis [BR:
rfq03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
117020770 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Rad60-SLD_2
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
117020770
NCBI-ProteinID:
XP_032959339
Ensembl:
ENSRFEG00010008431
UniProt:
A0A671EQK9
LinkDB
All DBs
Position
3:complement(101982018..103105114)
Genome browser
AA seq
463 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVDSATSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDLMVQSCD
LDQHSIVHVVLRPGTRGPAVNTAGGNNPQNTVRGSARGPESLTRVDFSSSVLPTDSVGLA
VILHDDRENAAPPAGKPAGRPAYNSFYVYCKDPCQQVQPGKLRVRCSTCQQATLTLAQGP
SCWEDVLIPNRMSGECQFPNCPGTTAEFFFKCGAHPTSDKETSVALNLITTNSRAITCIT
CTDIRSPVLVFQCNDRHVICLDCFHLYCVTRLNDRQFIHDPELGYSLPCVAGCPNSLIKE
LHHFRILGEEQYNRYQQYGAEECVLRLGGALCPSPGCGAGLLLEPGQRQVTCEEGNGLGC
GFVFCRDCKEAYHEGECSPLASGAVTQAYRVDEEAAERARWEESSKETIKKTTKPCPRCH
VPVEKNGGCMHMKCPQPQCQLEWCWQCGCEWNRACMGAHWFDV
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtttgtgaggttcaactccagccatggtttcccagtggaggtcgattctgcc
accagcatcttccagctcaaggaggtggttgctaagcgacagggggttccagctgaccag
ttgcgtgtgattttcgcagggaaggagctcagcaatgacctgatggtgcagagctgtgac
ctggatcagcacagcatcgtccacgttgtgctgagaccggggacaagaggcccagctgtg
aacacagctggcgggaacaacccacagaacactgtgaggggctccgccagggggcctgag
agcttgactcgcgtggacttcagcagctccgtcctccccaccgactcggtgggcttggct
gttattctgcacgatgacagagagaatgctgccccaccagctggaaagccagcaggtaga
ccagcctacaacagcttttatgtctactgcaaagacccctgtcaacaagtgcagccagga
aaactcagggtgcggtgcagtacctgccaacaagccacgctcaccttggcccagggtcca
tcttgctgggaagatgtcttaatcccaaaccggatgagcggtgaatgccagttcccaaac
tgccctgggaccacagcagagtttttctttaaatgtggagcacacccaacctcggacaaa
gaaacatcagtagctttgaacctgatcaccacaaacagccgagctatcacctgcataaca
tgtacggacatcaggagccctgtcctggttttccagtgcaacgaccgccatgtgatttgc
ttagactgtttccacttgtactgcgtgacgagactcaatgaccggcagtttatccatgat
cctgagctcggctactctctgccttgtgtggctggctgccccaactccttgatcaaagag
ctccatcacttcaggattcttggagaagagcagtacaaccggtaccagcaatacggcgcc
gaggagtgcgtgctgcgactggggggcgcgctgtgccccagccccggctgcggggctggg
ctgcttctggagcccggacagaggcaagtcacttgcgaagagggcaacggcctgggctgt
gggttcgtcttttgccgggactgtaaggaagcgtaccacgaaggtgaatgtagccccctg
gcctcaggagcagttactcaggcctacagagtggatgaggaggcagcagagcgagctcgc
tgggaagagtcttccaaagaaacaatcaagaaaaccaccaagccctgtcctcgttgccac
gtgccagtggagaaaaacggaggatgcatgcacatgaagtgcccgcagccccagtgccag
ctcgagtggtgctggcagtgtggctgcgagtggaaccgcgcctgcatgggggcccactgg
ttcgacgtgtag
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