Rhinolophus ferrumequinum (greater horseshoe bat): 117020872
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Entry
117020872 CDS
T07722
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03013
Nucleocytoplasmic transport
rfq03015
mRNA surveillance pathway
rfq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117020872 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
117020872 (DDX39B)
03015 mRNA surveillance pathway
117020872 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfq03019
]
117020872 (DDX39B)
03041 Spliceosome [BR:
rfq03041
]
117020872 (DDX39B)
Enzymes [BR:
rfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117020872 (DDX39B)
Messenger RNA biogenesis [BR:
rfq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117020872 (DDX39B)
Spliceosome [BR:
rfq03041
]
Complex C
Other components
EJC/TREX
117020872 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117020872 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117020872
NCBI-ProteinID:
XP_032959540
Ensembl:
ENSRFEG00010001378
UniProt:
A0A671DM39
LinkDB
All DBs
Position
3:complement(2042905..2052092)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKVIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPEEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgacgtggacaatgagctcttggactacgaagatgatgaggtggagaca
gcagctgggggagacggggctgaggcccctgccaagaaggatgtcaagggctcctacgtc
tccatccatagctctggcttccgtgacttcctgctcaagccagagttgctccgggccatc
gttgactgtggctttgagcacccatcagaagtccagcatgagtgcatcccgcaggccatc
ctgggaatggatgtcctctgccaggccaagtcaggcatgggaaagacagcggtgtttgtg
ctggccacgctgcagcagctggagccagttactgggcaggtgtctgtgctggtgatgtgt
cacactcgggaattggcttttcagatcagcaaggagtatgagcgcttctctaagtacatg
cccaatgtcaaggtcgctgtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatattgtcgtggggacccctggccgcatcctggccctggct
cgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggacgtgcaggaaatattccgcatgaccccccac
gagaagcaggtcatgatgttcagtgctaccttgagcaaagtcatccgccccgtgtgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctggatgtccttgagttcaaccaggtggtgatctttgtgaagtccgtgcagcgctgc
atcgccctggcgcagctcctggtggagcagaacttcccggctatcgccatccaccgcggg
atgccccaggaggagcggctttctcggtatcagcagtttaaagattttcaacggcggatt
cttgtggccaccaacctgtttggccgaggcatggacattgagcgggtcaacatcgccttc
aactacgacatgcccgaggattccgacacctacctgcaccgggtggccagagcaggccgg
tttggcaccaagggtttggccatcacgtttgtgtcagacgagaacgatgccaagatcctg
aatgacgtgcaggaccgctttgaggtcaatattagcgagctgcccgaggaaatcgacatc
tcctcctacattgaacagacacggtag
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