Rhinolophus ferrumequinum (greater horseshoe bat): 117024872
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Entry
117024872 CDS
T07722
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117024872 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfq03019
]
117024872 (MTREX)
03041 Spliceosome [BR:
rfq03041
]
117024872 (MTREX)
03009 Ribosome biogenesis [BR:
rfq03009
]
117024872 (MTREX)
03016 Transfer RNA biogenesis [BR:
rfq03016
]
117024872 (MTREX)
Enzymes [BR:
rfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117024872 (MTREX)
Messenger RNA biogenesis [BR:
rfq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117024872 (MTREX)
Spliceosome [BR:
rfq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117024872 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
117024872 (MTREX)
Ribosome biogenesis [BR:
rfq03009
]
Eukaryotic type
Pre-60S particles
Helicases
117024872 (MTREX)
Transfer RNA biogenesis [BR:
rfq03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117024872 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
117024872
NCBI-ProteinID:
XP_032966400
Ensembl:
ENSRFEG00010011497
UniProt:
A0A671EUC7
LinkDB
All DBs
Position
7:34395423..34469819
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSSTAPGAKKDKEKEKGKWKGPPGSAEKAGKRFDGKLQSESPNIG
KTKRDADFEGTDEPIFGKKPKVEESVTEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVVFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPA
VVEKVKNSEQQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELRCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagctcttcagcgtgttcgaggacgactcgtccactgct
cccggagccaaaaaagacaaggaaaaggagaaggggaaatggaaggggccgccagggtct
gcggaaaaggccgggaaacgttttgatggtaaattacaatcagagtcacctaatattggg
aaaaccaagagagatgcagatttcgagggtacagatgaacccatttttggaaagaagccc
aaggtagaagagtcagtaactgaagacttaagtttggcagacttgatgcccagagtcaaa
gtacaatcagttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccatttattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgtgttagtatct
gcacatacatcagcgggaaaaactgtgtgtgctgagtatgccattgcattagccttaagg
gaaaaacaacgtgtaatatttaccagcccaattaaggctctgagtaaccagaaataccgc
gaaatgtatgaagaatttcaagatgttggtctgatgacgggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctatacagaggttct
gaagttatgcgagaagttgcttgggttgtatttgacgaaattcattacatgagagattca
gagcgtggtgtggtatgggaagaaactattattttgcttcctgataatgttcattatgtc
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacat
aaacagccttgtcatgtaatttacacagattatcggcctactccattgcaacactacatt
tttccagctgggggagatggcctgcatcttgtagttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagttcttcgagatgctggtgatttggcaaaaggagat
cagaaagggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagttttagtaaaaaagactgtgaa
gcctatgcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgcaatcgactgcttgtcggatgaagataaaaagctccctcag
gttgaacatgtacttcctcttctgaagcgggggattggcattcaccatggtggtttactt
cctattttgaaagaaactatcgaaattctcttttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaacatgccagctagaacagtgttatttacaaat
gcccgaaaatttgatgggaaagatttccgatggatttcctctggtgaatatattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattcttatggtagat
gagaaaatgagcccaacaattggaaaacaactacttaagggctcagctgatcctttaaat
agtgctttccatttgacctacaacatggttttgaacttactacgtgtagaagaaatcaat
cctgagtacatgttggaaaaatccttttaccagtttcagcattatagagcaattccagca
gtagtagagaaggtaaagaactcagaacaacagtataataagatagtaataccaaatgaa
gaaagtgtagtcatctattataagattagacagcagcttgccaaactgggtaaagaaatt
gaagaatatattcacaaaccaaaatattgcttaccatttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtgaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagtagaagtacttctg
cgttgtagcaaagaaagcttaaaaaattcggctactgaggctgcaaagccagctaaacct
gatgagaaaggagagatgcaggttgttccagttttggtgcatctcctgtctgccatcagc
agtgttaggctttatattccaaaagaccttcgaccagtggacaatagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcccttattagatcctatt
gatgatatgggtattcaagatcaggggctgaaaaaagtcatccagaaagtagaggccttt
gagcatcgaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtataca
ctttgtgagaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaactaaag
aaagcaagaacagtcctacaaatggacgagctcagatgccgcaaacgtgttttaaggaga
ttgggatttgctacctcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagcgctgatgagctccttctaactgagatgatgttcaatggccttttcaatgatctg
tctgcagaacaggcaacggcactactaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcaattagcaggaccgcttcgtcaaatgcaggaatgtgctaaa
cgaattgcaaaagtttcagcagaggccaaattggaaattgatgaggaaacttacctaagc
tcattcaaacctcacttaatggatgtggtatatacctgggcaactggagctacctttgcc
catatctgcaaaatgacagatgtctttgaaggaagcataatacgttgtatgaggcgcctg
gaagaactgcttagacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctt
tacttatag
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