Rhinolophus ferrumequinum (greater horseshoe bat): 117028468
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Entry
117028468 CDS
T07722
Symbol
PRPF40B
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog B
KO
K12821
pre-mRNA-processing factor 40
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117028468 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rfq03041
]
117028468 (PRPF40B)
Spliceosome [BR:
rfq03041
]
Complex A
U1 snRNP components
U1 related factors
117028468 (PRPF40B)
Complex B
117028468 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
DTW
Motif
Other DBs
NCBI-GeneID:
117028468
NCBI-ProteinID:
XP_032972981
Ensembl:
ENSRFEG00010011898
LinkDB
All DBs
Position
10:50525307..50539266
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AA seq
872 aa
AA seq
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MMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGIMPPMLPPMGAPPPITQIPGMVP
PMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVW
EKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEALVKQEAVG
KQQQPQTLQPPPQPQPDPPPAPPGPTSVPMGLLEPEPGGSEDCDGSDAAQPLEQGFLQQP
EEGPSSSAGQQQPLQQEEEEAKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQA
MKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMT
STTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKGIL
DGMSSVTFQTTWSQAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERER
ARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPL
DLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIK
LTFNSLLEKAEAREREREKEEARRLRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDS
AFEQITLESERIRLFREFLQVLETECQHLHTKGRKHGRKGKKHHRKRSHSPSGSESEEEE
LPPPSLRPPKRRRRNPSESGSEPSSSLESVESXGAALGGRSSPSSRLLLGSDHGLRKAKK
PKKKTKKRRHKSNSPESETDPEEKPGKESEEKEPEQEKDRELRLVELPNRSPGFGIKKEK
VRDGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgatgccaccacccttcatgccccctccaggaatccccccaccctttcctccaatggga
ctacctcccatgagtcagagaccacccgccatcccccccatgccccctggcatcatgccc
ccaatgctgccacccatgggggcgccaccaccaatcacacagatccccgggatggtacct
cccatgatgccgggaatgctgatgccagcggtgcccgtcaccgcagcgacggctccgggt
gcggacaccgccagctctgctgtggctgggacaggccctccgagggccctgtggagtgag
catgtggcccctgatgggcgcatctactactacaatgctgacgacaagcagtccgtgtgg
gagaagcccagcgtgctcaagtccaaggcggagttgctgctgtcccagtgtccctggaaa
gagtataagtcagacacaggcaagccttactactataacaaccagagtaaggagtcccgc
tggacccggcccaaggacctggatgacctggaggctctagtcaaacaagaggctgtaggg
aaacagcagcagccacagacactacagccgcctcctcagccacagcctgaccccccacct
gcgcctcctggccccacctccgtgcccatgggcctcctagaaccggagccgggtgggagt
gaagattgtgatgggtcagatgctgcccagcccctggagcagggcttcctgcagcagccg
gaggagggccccagcagttctgctggacagcagcagccactacagcaggaggaagaggag
gcaaagccagaaccagagcggtctggcctcagttggagcaaccgtgagaaggcaaagcag
gcctttaaggagctgctgagggacaaggctgtcccctccaacgcctcatgggaacaggcc
atgaagatggtggtcaccgacccccggtacagtgccttgcccaaactgagtgagaaaaag
caggcattcaatgcctacaaggcgcagcgggagaaggaggagaaggaagaggcccggcta
agggccaaggaggccaagcagaccttgcagcacttcctggagcagcacgagcgcatgacc
tctaccacccgctaccggcgggcagaacagacctttggggagctggaggtctgggcggtg
gtccccgagagggatcggaaagaggtttatgacgacgtcctcttcttcctggccaagaag
gagaaggaacaggccaagcagctccggcgccgcaacatccaggccctgaagggcatcctg
gatgggatgagcagcgtcaccttccagaccacgtggtcccaggcccaacagtacctcatg
gacaaccccagctttgctcaggaccatcagctgcagaacatggataaggaagacgcactg
atctgcttcgaggagcacatccgagctctagagagggaggaggaggaagagcgggagcgg
gcccgcctccgggagcggcgccagcaacgcaagaaccgggaggccttccagaccttcctg
gacgagctgcacgagacagggcagctgcactctatgtccacctggatggagctgtaccca
gcagtcagcactgatgtccgctttgccaacatgctgggccagccgggctccacccctctg
gacttgttcaagttctatgtggaggagttgaaggcacgattccatgatgagaagaagatc
attaaggacatccttaaggaccggggcttctgtgtggaggtgaacacagcctttgaggac
ttcgcccacgtcataagctttgacaagagggctgccgcgctggacgcaggcaacatcaag
ctgaccttcaatagtctgctggagaaagcagaggcgcgggagcgagagcgggagaaggag
gaggcacgcaggctgcggcgcagggaggctgcctttcgaagcatgctgaggcaggccgtg
ccggccctggagctgggcaccgcctgggaagaggtccgtgagcgctttgtgtgcgactca
gcctttgagcagatcaccctggagtcggagcggatccggctcttccgggagttcctgcag
gtactggagactgaatgccagcacctccacaccaaaggccgaaagcacggcagaaagggc
aagaagcaccatcgcaagcgttcccactcaccctcaggctctgagtcagaagaggaggag
ctgcctccaccatctctccggccccccaaacggaggcggcggaacccttctgagtctggc
tctgagccctcttcctcacttgagtcagttgaaagtnggggtgctgcccttggaggtcgg
agctccccatcctcccgccttcttcttggatcagatcatggtcttcggaaagccaagaaa
ccaaaaaagaaaactaagaagagaagacacaagtcgaacagtcctgagagcgagacagac
cctgaggagaaacctggcaaggagagtgaggagaaagagccagaacaagagaaggacagg
gagctccggctggtcgagctccctaaccgctccccaggttttggaatcaagaaggagaag
gtgagagacggctgggacacgtcagaaagcgagctgagtgagggtgagctggaaaggcgg
cggcggacactcctgcagcagctggacgaccaccagtga
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