Rhinolophus ferrumequinum (greater horseshoe bat): 117029195
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Entry
117029195 CDS
T07722
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq04151
PI3K-Akt signaling pathway
rfq04510
Focal adhesion
rfq04512
ECM-receptor interaction
rfq04518
Integrin signaling
rfq04974
Protein digestion and absorption
rfq05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
117029195 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117029195 (COL2A1)
04518 Integrin signaling
117029195 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117029195 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
117029195 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
117029195 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rfq00536
]
117029195 (COL2A1)
Glycosaminoglycan binding proteins [BR:
rfq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117029195 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
117029195
NCBI-ProteinID:
XP_032974167
Ensembl:
ENSRFEG00010006489
UniProt:
A0A671EA03
LinkDB
All DBs
Position
10:complement(49425501..49456706)
Genome browser
AA seq
1487 aa
AA seq
DB search
MIRFGAPQTLVLLTLLVATVLRCHGQDVQKADSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSTDLATASGHPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGAPGENGSPGPMGPRGLPGERGRTGPAGSAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPTGASGNPGTDGIPGAKG
SAGGPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPVGPPGERGAPGNRGFPGQDGLVGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLSGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGQRG
LPGTPGTDGPKGASGPVGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGTPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGAPGEKGEPG
DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGPLGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPAGPAGARGIAGPQGPRGDKGETGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGGREKGPDPMQYMRADQAAGNLRQHDAEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPANVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcttcggggctccccagacgctggtgctgctgacgctgctcgtcgccactgtc
cttcggtgtcacggccaggatgtccagaaggctgacagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagaatgctgccccatctgctcaactgacctcgccactgccagtgggcatcca
ggaccaaagggacagaaaggagaacctggagacatcaaggatattgtaggacccaaagga
ccacctgggcctcaggggcctgcaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctggaacccctggaaat
cccggcccccctggccctcctggcccccctggtccccctggccttggtggaaattttgct
gcccagatggccggaggatttgatgagaaggctggtggcgcccagatgggagtcatgcaa
ggaccaatgggccccatgggacctcgcggacctccaggcccggctggcgctcccggacct
caaggatttcaaggcaatcctggtgaaccgggggaacccggcgtctctggtcccatgggt
ccccgtggtcctcctggcccccctggaaaacctggtgatgatggtgaagctggaaagcct
ggaaaatctggtgaaagaggccctcctggccctcagggtgctcggggcttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggttacccaggcctggatggtgctaagggc
gaagctggtgctccaggtgtgaagggcgagagtggtgctcccggtgagaatggctctccg
ggcccaatgggtccccgtggtctgcctggtgagagaggacggactggccctgccggctcc
gcgggtgcccggggcaatgatggtcaaccaggccctgcaggtcctccgggtcccgtgggt
cctgctggtggtcctggctttcctggggctcccggtgccaagggtgaagctggtcccacc
ggtgctcgtggtcccgaaggcgctcaaggtcctcgtggtgaacctggcaatcctgggtcc
cctgggccaactggtgcctctggtaaccctggaaccgatggaattcctggagccaaagga
tctgctggtggtcctggcattgctggtgctcccggcttccccgggccccgtggtcctcct
ggccctcaaggtgcaactggtcctctgggcccgaaaggtcagacgggtgagcctggtatt
gctggcttcaaaggcgaacaaggccccaagggagaacctggccctgcaggcccccaggga
gcccctggtcctgctggtgaagaaggcaaaagaggtgcccgtggagagcctggtggtgct
gggcccgttggtcccccgggagaaagaggtgctcctggcaaccgtggtttcccaggtcaa
gatggtctggtagggcccaagggagcacctggagagcgagggcccagtggccttgctggc
cccaagggagccaacggggaccctggccgtcccggagagcctggccttcctggagcgcgg
ggtctcactggccgccctggtgatgctggtcctcaaggcaaagttggtccttctggagcc
gctggagaagatggtcgccctggacctccaggtcctcagggggctcgtgggcagcctggt
gtcatgggtttccctggtcccaaaggtgccaatggcgagcctgggaaagctggtgagaaa
ggactgtctggtgctcctggtctgagaggtcttcctggcaaagatggtgagacaggtgct
gcaggcccccctggacccgctggacctgctggtgaacgaggcgagcagggcgctcctggg
ccatctgggttccagggacttcctggccctcctggtcccccaggtgaaggtggaaaacca
ggtgaccagggtgttcccggtgaagctggagcccccggcctcgtgggtcccagaggtgaa
cgaggtttcccaggggaacgtggctctcctggtgcccagggcctccagggtcaacgtggt
ctccccggcactcctggcactgacggtcccaaaggtgcatctggcccagttggcccccct
ggggctcagggccctccaggtctacaggggatgcccggtgagaggggagcagctggtatt
gctgggcccaagggcgacaggggtgatgtcggtgagaaaggccctgagggagcccccggg
aaggacggtggacgaggtctgaccggtcccattggcccccctggcccagctggtgccaat
ggtgagaagggagaagttggccctcctggcccttcgggaacagctggtgctcgcggtgcc
ccgggtgaacgtggagagactggaccccctggacccgctggatttgccggtcctcccggt
gctgatggccagccaggtgccaagggtgagcaaggagaggccggccagaaaggcgacgct
ggcactccgggtccgcagggcccctccggagctcctgggcctcagggtcctactggtgtg
actggtcctaaaggagcccgcggtgctcaaggccctccgggagccactggattccccgga
gctgctggccgtgttggacccccaggctccaatggaaaccctgggcccccgggaccccct
ggtccttccggaaaagatggtcccaaaggtgctcgaggagacagtggcccacctggccga
gctggtgaccccggcctccaaggtcctgctggagcccctggcgagaagggagagcctgga
gatgatggtccctctggtcccgatggtcctccaggtccccagggtctggctggtcagagg
ggcatcgttggtcttcctgggcagcgtggtgagagaggattccctggcttgcccggccca
tcgggtgagcctggcaagcagggagctcctggtgcatctggagaccgaggtccccctggc
cctgtgggtcctcctggtctgactggtcccgctggtgaacctggacgagagggaagccct
ggtgctgacggcccccctggcagagatggtgcagctggagtcaagggtgatcgtggtgag
actgggcccctgggtgctcctggagcccctgggccccctggctctcctggccccgcaggc
ccaactggcaagcagggagatcgaggagaagctggtgcacaaggccccatgggacctgca
ggacctgctggagcccggggaatcgcaggccctcaaggcccccgcggtgacaaaggagaa
actggagaggctggagagaggggactgaagggtcaccgtggcttcactggtctgcagggt
ctgcctggccctcctggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggcccgagaggtcctcctggccctgttggtccctcgggcaaagatggtgctaatggaatc
cctggccccattggacctcctggtccccgtggacgttctggcgaaaccggccccgctggt
cctcctggaaatcctggcccccctggccctcctggcccccccggccctggcatcgacatg
tcggcctttgctggcctgggtgggagagagaaaggacctgaccccatgcagtacatgcgg
gcagaccaggcagccggcaacctgagacagcacgatgccgaagtggatgccacgctcaag
tccctcaacaaccagattgagagcatccggagccccgagggctcccgcaagaaccccgct
cgcacctgcagggacttgaaactctgccaccctgaatggaagagcggagactactggatt
gaccctaaccagggctgcaccttagacgccatgaaggttttctgcaacatggagactggc
gagacttgtgtctaccccaacccagcgaatgttcccaagaagaactggtggagcagcaag
agcaaggacaagaaacatatctggtttggagaaactatcaacggtggcttccacttcagc
tatggtgatgacaacctggctcccaacactgccaacgtccagatgaccttcctgcgcctg
ctgtccaccgagggctcccaaaacatcacctaccactgcaagaacagcattgcctacctg
gacgaagcagctggcaacctcaagaaggccctgctcatccagggctccaatgacgtggag
atccgggctgagggcaacagcaggttcacgtacaccgtcctgaaggatggctgcacgaaa
cacaccggtaagtggggcaagactatgatcgagtaccggtcacagaagacctcacgcctg
cccatcattgacattgcacccatggacataggcgggcccgagcaggaatttggtgtggac
atagggcctgtctgcttcttgtaa
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integrated database retrieval system
