Rhinolophus ferrumequinum (greater horseshoe bat): 117029339
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Entry
117029339 CDS
T07722
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rfq04121
]
117029339 (PDZRN4)
Enzymes [BR:
rfq01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117029339 (PDZRN4)
Ubiquitin system [BR:
rfq04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
117029339 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_2
Sina_ZnF
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-rbx1
TRAF3_RING
zf-RING_6
PDZ_Tricorn
U-box
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
117029339
NCBI-ProteinID:
XP_032974440
Ensembl:
ENSRFEG00010004712
LinkDB
All DBs
Position
10:44376008..44714519
Genome browser
AA seq
1034 aa
AA seq
DB search
MGFALERFAEAVDPDFECKLCGQVLEEPLCTPCGHVFCASCLLPWAARRRRCPLQCQPLE
PSELYRVLPLRSLIRKLRVQCDYRARGCGLSVRLHKLQAHVERCDFGPARCCLRGCISQL
GGRGGGDVPARGGCGTAPGAVPGGGARGGLPGSCRGSGCAPGPRVLSWRRREKALRAQLW
ALQGEVQLTARRYQEKFTQYMAHVRNFARDLGGGHGLDGEYKPVTIVLERENDTLGFNII
GGRPNQEETSTEGIYVSKILENGPADKADGLEIHDKIIEVNGKDLSKATHEEAVEAFRNA
KEPIVVQVLRRTPLSKPIYGTPQDVQLMNASTQTDITFEHIMALAKLRPPTPPVPDICPF
LLSDSCHSLHPMEHEFYEDNEYLPSLPADADRTEDFEYEEVELCRVSSQEKLGLTVCYRT
DDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSSDECKRIVLL
VARPEIQLDEGWLEDERNEFLEELNLEMLEEQHNEAMQHTANEVEQPKKQEEEEGTTDTA
TSSSNNHEKDSGVGRTDESLRNDESSEQENAAEDPNSTSLKSKRELGQSQDTLGSVELPC
NESFLSGEYIDSDCTGNQDEECEQFRQLLELKCKIRNHGEYDLYYSSSTIECNQGEQEGV
EHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWALHDGGFRNYNTSIDMQRGKLD
DIIEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRMINLTNKKNLRSTIAANQSS
SGQSSKESISPKAKATEQGCGIEGKEKTSESNKVSDQEKTGSEHIPYLSPYHSSSYRYSN
IPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKCSEPKMEWKVKIRSDGTRYIT
KRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREF
MMRSRLECLKESPQSGSEGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPD
GTRVHNAFLSVTTV
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgccctggagcgcttcgccgaagccgtagacccggatttcgagtgcaagctg
tgcggccaggtgctggaggagcccctgtgcacgccgtgcgggcacgtcttctgcgccagc
tgcctgctgccctgggcggcgcggcggcgccggtgcccgctgcagtgccagcccctggag
cccagcgagctgtaccgggtgcttcctctgcgcagcctcatccgcaaactgcgcgtccag
tgtgactaccgcgcccgcggctgtggcctctcggtccggctgcacaagctgcaggcgcac
gtcgagcgttgcgacttcggtcctgctcgctgctgcctccggggctgcatctcccagctg
ggcggccgcggtggcggagacgtgcccgcgcgggggggctgcggaacggcgcccggggcc
gtcccgggcgggggcgcgcgcggggggctgccgggcagctgccgcgggagcggctgtgca
cccgggcctcgagtcctctcctggaggcggcgcgagaaggcgctgcgggcgcagctctgg
gcgctgcaaggcgaggtgcagctcacggcccgcaggtaccaggagaagttcacccagtac
atggctcacgtccgaaacttcgccagggacctgggcggcggccacggcctggatggagaa
tataagccagtcaccattgtattagaaagagaaaatgacactttgggattcaatattata
ggaggtcgaccaaatcaggaagaaacatcgacagaaggaatttatgtctcaaaaattttg
gaaaatggacctgctgacaaagcagatggcctggagattcatgacaaaatcattgaggtc
aatgggaaggacctctcaaaggccacccatgaagaggcagtggaagctttccgaaatgcc
aaggagcccatcgtggttcaggtgctaaggcggacgcctctcagtaaaccaatctatggc
acgccccaagatgtgcagctcatgaatgccagcactcagacggatatcaccttcgagcac
atcatggccctggccaaacttcggccacctacccctccagtgccagacatctgtccattt
ctgctctcagacagctgccattctcttcacccgatggagcatgaattttatgaggacaat
gagtatcttcccagcttgccggctgatgcagacagaacagaggactttgaatatgaggag
gtcgagctgtgccgtgttagcagtcaagagaagctgggcctgacagtctgttaccgaacg
gatgatgaagaagacaccggcatttatgtcagcgaggtagatccaaatagcattgctgcc
aaagatgggcgaattcgagaaggggatcgtattttgcagataaatggggaagatgtccag
aatcgagaagaagcagtggcattgctctctagcgatgaatgcaaaagaatcgtgctgctt
gtagcaaggccagagattcagctggatgaaggctggctggaagatgaaaggaatgaattc
ttagaggagttaaacttggaaatgttggaagaacagcataatgaagcaatgcaacacact
gccaatgaggtggagcagccaaaaaaacaagaagaagaagaaggcacaacagacacagcc
acatcctcatccaacaaccatgagaaggacagtggagtggggcgcacagatgaaagcttg
cggaacgatgagagctcagagcaggagaatgcagcagaggatcccaacagcacatctttg
aagagcaaaagagagctggggcagagccaagacactctagggagcgtggaacttccgtgc
aatgagagcttcctatccggtgaatacattgactcagactgcactggaaaccaagatgag
gagtgtgaacaattccggcagctcttggagctcaaatgcaagattcgaaaccatggagag
tatgacctgtattactcgagcagcacaatagaatgcaatcaaggggaacaagagggagtg
gagcatgagctacagttgcttaatgaagagctaagaaacattgaacttgagtgtcagaat
atcatgcaggctcacaggctccagaaagtgacagaccagtatggagatatctgggcattg
catgatggaggattcagaaactataacaccagcattgatatgcaaaggggaaagctagat
gacatcattgaacacccagaaaagtcagacaaggacagttctagtgcttacaacacagct
gaaagctgcagaagcactcctctcactgtggatcgttcccctgacagttcccttccaaga
atgatcaacctcaccaataagaaaaacctgagaagcacaattgcagccaatcagtcctct
tctggacagagcagtaaagaatcgatctcccccaaagccaaagccactgaacaaggttgt
ggcattgaaggcaaggagaagacttcagaaagcaacaaggtttctgaccaagaaaagaca
ggcagcgaacacatcccttacctctctccttaccacagctcctcatatagatactcaaac
atcccagcacatgcccgacattatcaaagctacatgcagttaattcaacagaaatctgca
gtagaatatgctcagagtcagctcagtttggtgagtatgtgcaaggagtctcagaagtgt
tcagagcccaagatggaatggaaggtgaaaattaggagcgatgggactcggtacataaca
aagagaccagtgcgagacaggattctgaaggaacgtgccttaaagatcaaggaggaacgg
agtggcatgacaacagatgatgacaccatgagcgagatgaaaatggggcgctactggagc
aaagaggagagaaagcaacacctggttcgggccaaagagcagcgtcggcgccgagagttc
atgatgcggagccgattggagtgtctcaaggagagtcctcagagcggcagcgagggcaag
aaggagatcaacatcattgaactgagtcacaaaaagatgatgaaaaaaagaaacaagaaa
attttggacaactggatgacaatccaagaactgatgacccatggggctaagtctcctgat
ggcacacgagttcataatgcctttttgtcagtcaccactgtatga
DBGET
integrated database retrieval system
