Rhinolophus ferrumequinum (greater horseshoe bat): 117029999
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Entry
117029999 CDS
T07722
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117029999 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfq03021
]
117029999 (PCF11)
03019 Messenger RNA biogenesis [BR:
rfq03019
]
117029999 (PCF11)
Transcription machinery [BR:
rfq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117029999 (PCF11)
Messenger RNA biogenesis [BR:
rfq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117029999 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
117029999
NCBI-ProteinID:
XP_032975415
Ensembl:
ENSRFEG00010010412
UniProt:
A0A671EQC2
LinkDB
All DBs
Position
11:56518860..56542228
Genome browser
AA seq
1683 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQPEKSRPGPSLQIPDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDTKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSPSPLKNKLSHTKDLKNQESESTRVSDMSKRDPRLKKHLQDKTDSKEDDIKE
KRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTIPEELEKQGTKPGRSSNRKRSR
SRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKVGKIRQSGVKQSHMEEFAPPSRDE
RNAKRSTKQDVRDPRRIKKSEEERPQETANQHSTKSGTEPKENVENWPSSKSSKRWKPGW
EENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTHANKR
ELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKPLL
SDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRNS
GAQFDRKEQFSERARRLSPISGSRTYAENLAPHEGRRRHDEQVSAKGVREEQRSPFNDRF
PLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVPRDGPTKMIFE
GPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP
LRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQSVGGLRFEGHRGQPVGGLRF
EGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQQG
VGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGP
VPGGGLRIEGPLGQGGPRFESCHGLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQ
RFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGARFDNHPSQRLESVSFNQTG
PYNEPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGHGNQSFSNPLNRASGHYFDEK
NLQSSQFGNFGNLPAPITVGNIQASQQVMTGVAQPVPFGQGQQFLPVHPQNPGAFVQNPS
GALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQINEVAAQPPPEEEEDQNED
QDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTE
KDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSV
PAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTP
SPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQVDTPPSCTEESIATPAEIKTENDTV
KSV
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggacgagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaagttacgttcc
acatgggatgaaatattcccattgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctaccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcccgaagagccttcgactcctggcacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgaactagagcaagctaaggcacaattggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgtttcacaa
attccccctatggcggttaaagctccccatcaggttcctgtgcaacccgagaaaagccgt
ccaggtccatccttacaaattccagatttgaaaggaactaaccgggatccccgtctcaat
aggatgagtcagcattcttctcatggaaaagatcagagtcacagaaaagaattcctaatg
aacacattgaaccaatctgatactaaaacaagtaaaactgtaccctctgaaaaactgaat
tcatccaaacaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttagattctaaatctaaatcaaaatcaccatcacctttaaaaaacaaattatcccacaca
aaagacttgaaaaaccaagaatctgaaagcacgagggtgtctgatatgagcaagagagat
ccaagattaaaaaaacatcttcaggataaaactgatagcaaagaagatgatataaaagag
aagagaaaaactgcagagaaaaaggataaagatgagcatatgaaatcatctgaacacaga
ctggttggaagtagaaataaaatcattaatggcattgtacaaaaacaggatacaatacca
gaagaattggaaaaacagggaacaaaaccaggaagatcgagtaatagaaagcgatcaaga
tcgcgatcacccaaatctcgatcaccaattatacattctccaaagagaagagataggcgg
tcacccaaacgaaggcaaaggagtatgtctccaacctcgacacccaaagttgggaagatt
cgccaatcaggagttaagcagtcacatatggaagaatttgcgccaccttccagggatgaa
agaaatgctaagagaagtactaaacaggatgttagagatccaaggcgaataaaaaagagt
gaagaggaacgaccacaagaaactgcaaatcagcattctacaaagtcaggcactgaacca
aaggagaatgtagaaaattggccaagttccaagtctagtaaacgatggaaacctggttgg
gaagaaaataaaagcttacaacagggtgatgaacatagtaaatctcctcatctaaggcat
agggaaagctggtcaagcactaaaggaatattgtcacctcgagccccaaagcaacagcat
cgattaagtgtagatgccaatcttcagattcctaaagagttaactcatgcaaacaaaaga
gaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggatgagttc
cttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacatagatgc
aatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacctctctta
tctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacaggttcag
cattcatttccaagacttgatctcttagatcctgatatttttgactaccctttgactgat
gccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtaggaatagt
ggagcgcagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttctcctata
tctgggagtcgtacttatgctgagaatcttgcaccccatgagggccggagaagacatgac
gagcaagtctctgctaaaggtgtacgagaagagcagagatcaccattcaatgatcgtttt
ccacttaagcgacctagatatgaagattcagataaaccgtttgtagatagccctgcttca
cgattcgccggcctcgatacaaatcagcgacttacagctttagctgaagacagaccatta
tttgatggacctagtaggccatcagtaccaagagatggcccaaccaagatgatttttgaa
ggacctaataaattaagccctagaattgatggacctcccacaccaggttctcttcggttt
gatgggtcacctggacaaatggggggaggtggccctttgagatttgaagggccacaaggt
cagctaggaggtgggtgtcctttgagatttgaaggtcctccgggaccagtagggacacct
ctgcggtttgaggggccaattggtcaagcaggaggaggtggttttcggtttgaaggttcc
cctggtctgaggtttgagggatctgcaggtggtctgcgatttgaaggaccagggggccag
tctgtgggtggtctcagatttgagggacatcggggtcaacctgtgggtggtctcaggttt
gagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggtcagcct
gtaggtggacttagatttgaggggggtcatggtccatcaggggctgcaattaggtttgat
ggacctcatggtcagccagcaggtgggatcagatttgagggccctttgctacagcaggga
gttggaatgaggtttgagggcccgcatggtcagtcagtagctggtctaaggtttgaagga
caacataaccaacttggtgggaaccttaggtttgagggtccacatggtcaaccaggggtt
gggatcaggtttgagggacctttagtccagcaaggaggtggaatgaggtttgagggtcct
gtaccaggaggtggcctgagaattgaagggcccctgggtcaaggtggtccaagatttgaa
agctgtcatggtttaaggttcgatggacagccaggtcagccatcactcttgccaagattt
gatggattacatggtcagccaggtcctagatttgaaagaaccggtcagccaggcccacag
agatttgatggaccacctggacagcaggttcaaccaagatttgatggtgtacctcaaaga
tttgatggtccacaacaccagcaagcatcaaggtttgatattcctctcggtcttcaaggc
gcacgatttgacaatcatccttcacaaaggcttgaatcagtttctttcaatcagactggt
ccatataatgagccacctggcaatgcttttaatgccccatcccaaggactgcagttccaa
agacatgaacaaatatttgattcacctcaaggaccaaattttaatggaccacatggccat
ggaaaccagagtttctcaaatccccttaacagagcttctggacactattttgatgaaaag
aatcttcagagttctcaatttggaaactttggcaatttacctgctccaataacagtagga
aatattcaggcatctcaacaggttatgactggtgttgctcagccagtaccatttggccaa
ggacagcagtttttaccagttcatccacaaaatccaggagcatttgttcagaatccttca
ggagctcttccgaaggcataccctgataatcatctcagtcaggtggatgtaaatgaatta
ttttcaaaactgctaaaaacaggaattctcaaattgtcccaacctgattcagctacaaca
caaataaatgaagttgctgctcagcctccccctgaggaggaggaagatcaaaatgaagat
caggatgttccagatcttaccaattttacaattgaagaattgaaacaacgttatgatagt
gttataaatcgactgtacactggtattcagtgttactcttgtggaatgaggtttacaaca
tcacagacagatgtatacgcagatcacttggactggcattatcggcaaaatagaactgaa
aaagatgttagcagaaaagtcactcatagacgttggtactacagtttaacagactggata
gaatttgaggaaatagcagatctcgaagaacgtgccaagagccagttttttgaaaaggtg
catgaagaagttgtgctcaaaacgcaggaggctgctaaagaaaaggagttccagagtgta
cctgcggggccagcgggagcagtcgagagttgtgaaatctgtcaagaacaatttgaacaa
tactgggatgaagaagaggaggaatggcatttaaaaaatgctatcagagtagatggaaag
atttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgtacacca
tctcccagcaagacaccagttgaaaaccccttgaacattatgttgaacattgtcaaaaac
gaattgcaggaaccttgcgaaagtcccaaagttaaggaagaacaagttgataccccacca
tcttgtacagaggaaagcatagcaacacccgctgaaattaaaacagaaaatgatacagtc
aagtcagtttaa
DBGET
integrated database retrieval system
