Rhinolophus ferrumequinum (greater horseshoe bat): 117030102
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Entry
117030102 CDS
T07722
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rfq03009
]
117030102 (IGHMBP2)
03012 Translation factors [BR:
rfq03012
]
117030102 (IGHMBP2)
Enzymes [BR:
rfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117030102 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
117030102 (IGHMBP2)
Ribosome biogenesis [BR:
rfq03009
]
Eukaryotic type
Other ribosome biogenesis factors
117030102 (IGHMBP2)
Translation factors [BR:
rfq03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117030102 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
nSTAND3
ResIII
AAA_16
AAA_25
AAA_22
UvrD-helicase
IstB_IS21
Helicase_RecD
Zot
SLFN-g3_helicase
Flavi_DEAD
PhoH
AAA
DnaB_C
NPHP3_N
UvrD_C_2
ATPase
NTPase_1
ABC_tran
Motif
Other DBs
NCBI-GeneID:
117030102
NCBI-ProteinID:
XP_032975686
Ensembl:
ENSRFEG00010020811
LinkDB
All DBs
Position
11:complement(3954261..3976733)
Genome browser
AA seq
992 aa
AA seq
DB search
MASAAVENFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQQTGLY
GRLLVTFEPRRGVSAGVLPSNSFTSGDIVGLYDEGSQLATGILTRITQKSVTVAFDEAND
FQLSLDRESSYRLVKLANDVTYKRLKKALITLKKYHSGPACSLIEVLFSDSAPSPASELQ
PLVFYNASLDASQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVRQGCKVLCCAP
SNVAVDNLVERLAQWKRRVLRLGHPARLLGSIQQHSLDAVLARSDSAQVIADIRKDIDQA
SVKNKKTQDKREKSNFRNEMKLLRKELKEREEAAMLESLKSADVVLATNTGASSDGPLKL
LPDGYFDMVVIDECSQALEASCWVPLLRARRCILAGDHKQLPPTTVSHKAARAGLSLSLM
ERLAQKHGDTVVRTLTVQYRMHRAIMQWASDAMYHGQLTAHPSVAGHLLRDLPGVAATED
TGIPLLLVDTAGCGLFELEEEDESKGNPGEVLLVSLHVQALLDAGVQASDIAVITPYNLQ
VDLLRQSLSHKHPKLEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTRA
RRHVAVVCDSHTVNNHTFLKTLVDYFTEHGEVRTAFEYLDDIVPENYSYESSQGPGRAGA
KPPGSSPCARKPGSRQQEGARGPRAAARLAQKTPRGKPLGPEGHTQLSLNGVSPEGVESR
DSAAHLRAVIAEFVASEQTRLEFPASLNSHDRMRVHQIAEEHGLRHDSAGQRKERFITVS
KRVPPAPPAPLAPPAPPAPPAPLAPAPPPPPCAEPPVREPSGPDQLDLKALHLERLQRGR
GGQEQRTKELQQATGSGTRKVPDKKKKKAKGPVAVDLPAKEDLDALVSAVMEADNTCGFS
KCTASVVTLGQLCRHCGHLYCLSHHLPEIHGCGERARTHARQRISREGVLYAGSGTKDRS
LAPARRAQLQRRLDKKLDELASQRRSKREKEK
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgcggccgtggagaacttcgtgaccaagcagttggacctcctggagctcgag
agagacgcggaggtcgaggagcgcaggtcctggcaggaaaacatctctctgaaagagctc
cagagccgaggtgtctgtttgctgaagctacaggtatccagccagcagactgggctgtat
ggacggctcctggtcacctttgagccccggagaggcgtgtctgcaggagtgcttcccagt
aacagctttacttccggtgatatagtgggtctatatgatgaaggaagtcagctggccact
ggcatcctgacccgcatcacccagaaatcagtcacggtggccttcgacgaagccaatgat
ttccagctgagcttggaccgagagagttcctaccggctggtaaaactggccaatgacgtc
acttacaagcgactgaaaaaagctctaatcaccctaaagaagtatcactctggacccgca
tgctccctcatcgaggtcctcttcagcgactccgcccccagtcctgccagcgaactacag
ccgctggttttctacaacgcctccctggacgcctcccagaaggaagcggttttgtttgcg
ctgtcccagaaggagctcgccatcatccacgggcctcctggcactgggaaaactaccacg
gtggttgaaatcatccttcaagctgtgaggcagggctgcaaggtcctgtgctgcgcgccc
tccaatgttgccgtggacaacctggtggagcgtctggcgcagtggaagcgaagggtcctg
cgtcttggacaccccgcccggcttctgggctccatccagcagcactccctggacgcggtt
ctagcacgcagcgacagcgcccaggtcatcgcggacatccggaaggacatcgaccaggcc
tccgtgaaaaacaaaaagacccaggataagagagagaaaagtaactttcgaaacgaaatg
aagctgttaaggaaggagctgaaggaaagggaagaagcagcgatgctggaaagcctgaag
tcggcagatgtggtcctggccacaaacacaggtgcttcttccgacggccccctgaagttg
ctgcctgatggctacttcgatatggtggtcatcgatgagtgttcccaggccctggaagcc
agctgctgggtcccgctgctgagggccagaaggtgcattctggctggagaccacaagcag
ctgccgcccaccacggtctctcacaaggctgcgcgggctgggctgtcgctcagcctgatg
gagcgtctggcccagaagcacggtgacacggtggtacggacgctgaccgtgcagtaccgg
atgcaccgcgccatcatgcagtgggcctcagacgccatgtaccacgggcagctcacggca
cacccttctgtggccggccacctcctgcgggacctcccgggagtggctgccacagaggac
acgggcattcccctgctgcttgtggacacagccggctgcgggctgttcgaactggaagag
gaggatgagtctaaaggaaaccccggtgaagtgctcctcgtcagtctacatgtccaggct
ctgctggatgctggcgtccaagcgagtgacattgccgtcatcacaccatacaacctgcag
gtggacctgctcagacagagcctctctcacaagcaccccaagcttgaaattaagtcagtc
gatggcttccaaggccgcgagaaggaggctgtggtactgtccttcgtcagatcgaatagg
aaaggtgaagttggtttccttgccgaggaccggaggatcaatgtcgccgtcacccgcgct
cggcgccacgtggcggttgtctgcgattctcacactgtcaacaaccacactttcttgaag
accctggtggattatttcaccgagcacggggaggtgcgcacagcctttgagtatctcgat
gacatcgtccctgaaaactattcctatgagagttcccagggtcccggccgagctggtgca
aagcctccaggctcttccccgtgtgccaggaagcctggaagtaggcagcaggagggagcc
cgggggcccagagcggctgccaggctggcccagaagacaccgcgcgggaagcctctgggc
cctgagggccacactcagctcagtctcaacggagtcagcccagagggagtggagagcaga
gacagtgcagcccacttacgggctgtcatagcagagtttgtggcgagtgagcagacgcgg
ctggagtttcctgcttccctgaactcgcacgacaggatgcgcgtccaccagatcgctgag
gagcacgggctgaggcatgacagcgccggacaaaggaaagagagattcatcactgtgagc
aagagggtgccgccggctccacctgccccgctggcaccacctgccccgccggcaccacct
gccccgctggccccggccccgccgcctccaccctgtgctgagcctcccgtcagggagccc
agcggcccagaccagctagacctgaaggccctgcacctggagagactgcagagggggagg
ggtgggcaggagcagcgaaccaaggagctccagcaggccacgggctcggggacgcggaag
gtaccagacaagaaaaagaaaaaagccaaaggacctgtggccgtagacctgcccgccaag
gaggacctggacgctctggtctcggctgtcatggaggccgataacacttgtggcttttcc
aagtgcacagccagcgtcgtgactctgggccagctctgccggcactgcggccacctctat
tgcctcagccaccacctgcccgagatccacggctgtggggagagggctcgtacccacgcc
cggcagagaatcagccgggaaggagtcctctacgccggcagtgggaccaaggacaggtcc
ctggccccagccaggagggcccagctccagaggaggctggataagaagctggatgagctg
gccagtcagaggaggagcaaacgggagaaggaaaagtga
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