KEGG   Rhinolophus ferrumequinum (greater horseshoe bat): 117030128
Entry
117030128         CDS       T07722                                 
Symbol
ATG13
Name
(RefSeq) autophagy-related protein 13 isoform X1
  KO
K08331  autophagy-related protein 13
Organism
rfq  Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq04136  Autophagy - other
rfq04140  Autophagy - animal
rfq04211  Longevity regulating pathway
rfq05010  Alzheimer disease
rfq05014  Amyotrophic lateral sclerosis
rfq05016  Huntington disease
rfq05017  Spinocerebellar ataxia
rfq05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:rfq00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    117030128 (ATG13)
   04136 Autophagy - other
    117030128 (ATG13)
 09150 Organismal Systems
  09149 Aging
   04211 Longevity regulating pathway
    117030128 (ATG13)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    117030128 (ATG13)
   05014 Amyotrophic lateral sclerosis
    117030128 (ATG13)
   05016 Huntington disease
    117030128 (ATG13)
   05017 Spinocerebellar ataxia
    117030128 (ATG13)
   05022 Pathways of neurodegeneration - multiple diseases
    117030128 (ATG13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rfq04131]
    117030128 (ATG13)
   03029 Mitochondrial biogenesis [BR:rfq03029]
    117030128 (ATG13)
Membrane trafficking [BR:rfq04131]
 Autophagy
  Autophagosome formation proteins
   ULK complex
    117030128 (ATG13)
   Atg1 complex
    117030128 (ATG13)
Mitochondrial biogenesis [BR:rfq03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-independent mechanism factors
    117030128 (ATG13)
SSDB
Motif
Pfam: ATG13
Other DBs
NCBI-GeneID: 117030128
NCBI-ProteinID: XP_032975771
Ensembl: ENSRFEG00010001557
UniProt: A0A671DN19
LinkDB
Position
11:complement(14340797..14381124)
AA seq 550 aa
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLNGLGEGFQTVRVGTVGTPV
GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTTGEDTGV
TYPSVEDSQEVCTTSFSTSPPSQCVFTVTKAHFQTPTPVVTDTLRVPMAGLAFSHQLSSS
RLSYQPAALGVGSADLAYPVVFAAGLNTTHTHQLMVPGKEGGVPLAPNQPAHGAQADQER
LATYTPSDGAHCAATPSSSEGTETVSNSSDGRASPHDVLETIFARKVGAFVNKPINQVTL
TSLDIPFAMFAPKNLELEGADPMVNPPDSPETASPLQGSLHSDGSSGGSGGNTHDDFVMI
DFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVR
EFDAFVETLQ
NT seq 1653 nt   +upstreamnt  +downstreamnt
atggaaactgatctgaattcccaggacagaaaggacctggacaagttcattaaatttttt
gccctcaagactgttcaagtgattgtccaggctcgacttggtgagaagatttgtactcgt
tcatcttcatccccaacgggttcagattggttcaatttagccatcaaagacatcccagag
gttacacatgaagcaaagaaagcgctggcagggcagctgcctgccgtcgggagatctatg
tgtgtggagatctcactcaagacttctgagggagattccatggagctagaaatttggtgt
cttgaaatgaatgaaaagtgtgataaagaaatcaaagtttcctacacggtgtacaacagg
ctgtcgctgctgctgaagtctctcctggctataactagggtgacaccagcttacagactc
tccagaaaacaagggcatgaatatgtcatattgtacaggatatattttggggaagttcag
ctgaatggcttaggagaaggtttccagacagttcgcgttgggacagtgggtacccctgtg
ggcaccatcactctttcttgtgcctacagaattaacttggcattcatgtccaccaggcaa
tttgagaggaccccacctatcatggggattatcattgatcactttgtggaccgtccctat
cccagctcctcgcccatgcacccttgtaattacagaaccactggtgaggacactggcgta
acatatccttctgtggaagattctcaagaagtgtgtaccacctctttttccacctccccg
ccatcccagtgtgtgtttactgtcacaaaggcacattttcagacccctactcctgtggtg
acggataccctgagggtccccatggcaggactggccttttcccatcaactctcgagctct
cgcctttcctatcagcctgctgccctgggcgttggatccgctgacctggcttatccagta
gtgtttgctgctggcttaaacaccacacacactcatcagctaatggttcctgggaaggaa
ggcggggtaccgcttgctcccaaccagcctgcccacggcgcccaggctgatcaggagaga
ttggcaacctacaccccttctgacggggcccactgtgctgccacaccttccagcagtgag
ggtaccgagactgtgtcaaacagcagtgacggacgggcctctccccatgacgtcctggag
accatctttgcccgaaaagtgggggcttttgtcaacaaacccatcaaccaggtgaccctg
accagtttggacataccctttgccatgtttgctcccaagaatttagagttggagggtgct
gatcccatggtgaatcccccagattccccagagactgcgtctcctctccagggcagcctg
cactctgacggctccagcgggggcagcggcggcaacacccacgacgactttgttatgatc
gacttcaaaccggctttttctaaagatgacattcttccaatggacttgggaaccttctat
cgtgaatttcagaacccccctcagctaagcagcctctccatcgatatcggggcacagtct
atggctgaggacttggactcactaccagagaagctggctgtgcatgagaagaatgtccga
gaatttgatgcctttgtagaaaccctgcagtaa

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