Rhinolophus ferrumequinum (greater horseshoe bat): 117032747
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Entry
117032747 CDS
T07722
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq01524
Platinum drug resistance
rfq03430
Mismatch repair
rfq05200
Pathways in cancer
rfq05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117032747 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
117032747 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
117032747 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
117032747 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfq03400
]
117032747 (MSH6)
DNA repair and recombination proteins [BR:
rfq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117032747 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
117032747
NCBI-ProteinID:
XP_032980248
Ensembl:
ENSRFEG00010005308
LinkDB
All DBs
Position
13:complement(38145373..38163224)
Genome browser
AA seq
1355 aa
AA seq
DB search
MSRQSTLYSFFPKSPVLNNANKASSEGGAAAATGASPSSGGDAAWSEAGPGPGPLVRSPS
PPKAKNLNGGLRRSAAPAVPSSSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIREKG
KCARIHVQFFDDSPTRGWVSRRLLKPYTGSKSKEAQKGGHFYSAKPEILRAMQRADEALN
KDKSKRLELAVCDEPSEPEEEEMEVGATYASDKSEDNEIESEEEVQPKVQGSRRSSRQIK
KRRVISDSESDVGGSDVEFKPDAKEEGSSDEISSGMGDSDSEGLHSSVKVAPKRKRMVTG
NGSLKRKSSRKEMPPATKRTTGISSETKSTLSAFSPPQNSESQGHNSGGCDNSSRTTLWY
HETLEWLKDEKRRDMHRRRPDHPDFDASTLHVPEDFLNSCTPGMRKWWQIKSQNFDLVIF
YKVGKFYELYHMDALIGVNELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT
ETPEMMEARCRKMAHISKHDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE
EDTSGHTRVYGVCFVDASMGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSTETK
MILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFTEKLNEDRGVMLPRVLKGMTSES
DSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVSATRPGAVF
AKANQRMVLDSVTLNNLEIFLNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPY
AINDRLDAIEDLMVVPDKVSEVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYE
ETTYSKKKIIDFLSALEGFKVICKIIGIMEEVVDDFKSKILKQIITLKTKNPEGRFPDLT
MELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRS
IVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRD
VSLKDCMRRLFYNFDKNYKDWQAAVECITVLDVLLCLANYSRGGDGPMCRPVILLPKEDT
PVFLDLKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMR
QAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHAT
AHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLG
HMACMVENDCEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK
TTHSLQLFREVCLASEKSTLDAEAVHKLLTLIEEL
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcacgctgtacagtttcttccccaagtctccagtgctgaataatgcc
aacaaggcctcaagtgaaggcggcgccgccgctgccactggggcctccccttcctccggc
ggggatgccgcttggagcgaggctgggcctgggcccgggcccttggtgagatctccatcg
ccgcccaaggccaagaacctcaatggagggctgcggaggtctgcagcgcctgccgtcccc
tccagttcttgtgacttctcaccaggtgatttggtgtgggccaagatggagggttacccc
tggtggccttgcctggtttacaaccatccttttgacggaacattcatccgtgagaaaggg
aaatgcgcccgcattcatgtacagttttttgatgacagcccgacaaggggctgggttagc
agaaggctgttaaagccatatacaggttcaaaatcaaaggaagcccagaaaggaggtcat
ttttacagtgcaaagcctgaaatactcagagcaatgcaacgtgcagatgaagccttgaat
aaagacaagagtaaaaggcttgaattggcagtgtgtgatgagccctcagaaccagaggaa
gaagaaatggaggtaggtgcaacttatgcatcagataagagtgaagataatgaaattgag
agtgaagaggaagtgcagccgaaggtccaaggatctaggcgaagtagccgccaaattaaa
aaacggagggtcatatccgactctgagagcgatgttggtggctctgatgtagaattcaaa
cccgatgctaaggaggaaggaagcagtgatgaaataagcagtggaatgggggatagcgac
agtgaaggcctacacagctctgtgaaagttgctccaaagcggaagagaatggtgactgga
aatggctctctcaaaaggaaaagttcaaggaaggaaatgcccccagccaccaaacgaaca
actggcatttcatcagaaaccaagagtactttgagtgctttctctccccctcaaaattct
gaatcccagggccacaatagtggaggatgtgataacagtagtcgcaccactttgtggtat
catgaaactttagaatggcttaaggacgaaaagagaagagatatgcacaggaggcgacca
gatcacccagattttgatgcatctacactccatgtgcctgaagatttccttaattcctgt
actcctgggatgaggaagtggtggcagattaagtctcagaactttgatcttgtcatattt
tacaaggtggggaagttttatgagctgtaccacatggatgctcttattggagtcaatgaa
ctaggactggtgttcatgaaaggcaactgggcccattcgggtttccctgaaattgcattt
ggccgatattcagattccctggtccagaagggctataaagtagcacgagtggaacagact
gagaccccagaaatgatggaggcacgatgccgaaagatggcacatatatctaagcatgat
agagtagtgaggagggagatttgtagaatcattaccaagggtacacagacgtacagtgtg
ttggaaggtgacccctctgaaaactacagtaaatatcttcttagcctcaaagaaaaagag
gaagatacttctggccacactcgagtatatggtgtatgctttgttgatgcctcaatggga
aagtttttcataggtcagttttcagatgatcgtcattgttccaggtttaggactttagtg
gcacattatcctccggtacaagtcttgtttgagaaaggaaatctctcaacagaaactaag
atgattctgaagggttcattatcctcttctcttcaggaaggtctgataccaggctcccag
ttttgggatgcagccaaaactttgagaactctccttgaagaagggtattttacagaaaag
ttgaatgaggacaggggggtaatgttaccccgggtacttaaaggtatgacctcagagtcc
gattctattgggttgacaccaggagagaagagtgaattggccctctcggctctaggtggt
tgtgtcttctacctcaaaaaatgccttatagatcaggaacttttatcaatggctaatttt
gaagaatatattcccttagattcggacatggtcagtgcaacaagacctggtgctgtcttt
gctaaagccaatcaacgaatggtgctagattctgtgacattaaataacttggagatcttt
ctgaatggaacaaatggttctaccgaaggtaccctactagagaagattgatacttgccat
actccttttggtaagcggctcctaaagcaatggctttgtgccccactgtgtaatccttat
gctatcaatgatcgtctagatgctatagaagacctaatggttgtgcctgacaaagtctct
gaggttgtagaccttctaaagaagcttccagaccttgagaggctactgagtaaaattcat
aatgttgggtctcctttgaagagccagaaccacccagatagcagggctataatgtatgaa
gaaactacatacagcaaaaaaaagattattgactttctttctgctctggaaggattcaaa
gtaatatgtaaaattatagggattatggaagaagttgtcgatgacttcaagtctaaaatc
cttaagcagatcattactctgaagacaaaaaatcctgaaggccgttttcctgatttgact
atggaattgaaccgatgggatacagcctttgaccatgaaaaggctcgaaagactggactg
atcactcccaaagcaggatttgactctgattatgaccaagctctcgctgacataagagaa
aatgaacagagcctcctggaatacttggagaaacagcgcagtcgaattggctgtaggagc
atagtctattgggggattggtaggaaccgttaccagttggaaattccagagaatttcatc
actcgtaatttgccagaagagtatgaattgaaatccaccaaaaagggctgtaaacgatac
tggaccaaaactattgagaagaagttggctaatctgataaatgctgaagaacggagagac
gtgtcattgaaggactgcatgcggcgactattctataactttgataaaaattacaaggac
tggcaggctgctgtggagtgcatcacagtgttagatgtcttattgtgcctggctaactac
agtcgtgggggtgatggtcctatgtgtcgtccagtaattctgttgccaaaagaagacact
cccgtcttcttagaccttaaaggatcacgccatccctgtattacgaagactttttttgga
gatgactttattcccaatgacattctaataggctgtgaggaagaagaggaggaaaatggc
aaagcttattgtgtgcttgttactggaccgaatatggggggcaagtctacactcatgaga
caggctggcctattagctgtaatggcccagatgggttgttatgtacctgctgaagtgtgt
aggctcacaccaattgatagagtgtttactagactaggtgcctcagacagaataatgtca
ggtgaaagcacattttttgttgaattgagtgaaactgccagtatacttacgcatgcaaca
gcacattctctcgtgcttgtggatgaattaggaagaggtactgcaacatttgatgggact
gcaatagcaaatgcagttgttaaagaacttgctgagaatataaagtgtcgtacattgttt
tctacccactaccattcattagttgaagattattctcaaaatgttgcagtgcgcctaggt
cacatggcatgcatggtagaaaacgattgtgaagatcccagccaggagaccattaccttc
ctctataaattcatcaaaggagcttgtcctaaaagctatggctttaatgcagcaaggctt
gctaatcttccagaggaggttattcaaaagggacatagaaaagcaagagaatttgagaag
acgactcattcactgcaattatttcgggaagtttgtctggctagtgaaaagtcgacttta
gatgctgaagctgtccataagttgctgactttgattgaggaattatag
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integrated database retrieval system
