Rhinolophus ferrumequinum (greater horseshoe bat): 117035180
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Entry
117035180 CDS
T07722
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117035180 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfq03019
]
117035180 (EDC4)
Messenger RNA biogenesis [BR:
rfq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117035180 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
117035180 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
DUF445
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
117035180
NCBI-ProteinID:
XP_032984810
Ensembl:
ENSRFEG00010018129
LinkDB
All DBs
Position
15:17434376..17445599
Genome browser
AA seq
1409 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGSSAESQRPSNTYNGDLNGLLVPDPLCSGDGT
SANKPGLRAMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLTFAHLNSSQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRSNHSTWPVDIGQIKQGFIVVKGHSTY
LSEGALSPDGTVLATASHDGFIKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVLPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGTMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPIHT
AHEDFAFPTAFGESRPELGSEGLESAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTP
DAFMTPSTSLQQIAASPSNSSSSSSSSGSSSSSSSSSLTAVSALSSTSAVDPSLPRPPEE
LTLSHKLQLDGSLTMSSSSSLQASSRSLLPGLLPGPADKLTPKGPGQVPTAASGLSLELQ
EVEPLGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEGLEPDSMASA
ASALHLLSPRPRPGPELGPQVGLDGGPGDGDRHSTPSLLEVALTQEATAPDSQVWPTAPD
ITRETCSSLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDTSAEQSDHDDEVASLASAA
GGFGTKVPTPRLPAKDWKTKGSPRASPKLKRKGKKDDGDSAVGSRLMEHQVAEPPEDWPA
IIWQQQREMAELQHSQEELLQRLCTQLEGLQSTVAGHVERALESRHEQEQRRLERALAEG
QQRGGQLQEQLTQQLSQALSSAVAGRLERSLRDEIKKTVPPCVSRSLEPVAGQLSNSVAT
KLTAVEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQA
MFQQINDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATV
SSSVRAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGT
PVPTALLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCP
LSQPVLLSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQF
LQVEPHNSLGKVARRLSLMLHGLVTPSLP
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctacgggacatc
ctcaagctggaccgtcccgcggggggctccagtgcagagagccagcggccatctaacacc
tacaatggagacctcaatgggctcctggtcccagaccccctctgctcaggtgatggtact
tcagcgaacaagcctggtctccgggccatgccacctattaacctgcaggagaagcaggtc
atctgcctctcgggagacgacagctccacctgcattgggattttggccaaggaggtggag
attgtggccagcagtgactcaagcatctcgagcaaagcacgagggagcaacaaggtgaaa
atccagcctgttgccaagtatgactgggagcagaaatactactatggcaacctgattgct
gtgtccaactccttcttggcctatgctattcgggctgccaacaatggctcggcgatggtg
cgggtgatcagcgtcagcacttcggagcggaccctactcaagggcttcacaggcagtgtg
gctgacctgaccttcgcacacctcaactcctcacagctggcctgcctggatgaggcaggc
aacctgttcgtgtggcgcttggctctggttaatggcaaaattcaagaagagattttggtc
catatccgtcagccggagggcacaccactgaaccacttccgtaggatcatctggtgtccc
ttcatccccgaggagagtgaggactgctgtgaggagggcagcccaacggtggccttgttg
cacgaggaccgggctgaggtgtgggacctggacatgctccgctccaaccacagcacctgg
cctgtggatatcggccaaatcaagcagggcttcatcgtagtaaaaggccacagcacatac
ctgagtgaaggggccctctcacctgatgggaccgtgctggctactgcaagccacgatggc
tttatcaagttctggcagatctacattgaggggcaggatgagccaaggtgtttgcatgag
tggaagcctcatgatggtcggcccctctcttgcctcttgttctgtgacaaccataagaaa
caggatcctgaggtccctttctggaggttcctcattactggtgctgaccagaatcgggag
ttaaagatgtggtgcacggtgtcctggacctgcctgcagaccattcgcttctccccagat
atcttcagctcagtgagtgtgctccccagcctcaaagtttgcttggacctctccgcagaa
tacctgattctcagtgatgtgcagcggaaggtcctctacgtgatggagctgctgcagaac
caagaggagggccgtgcctgcttcagctccatctctgagttcctgctcacgcacccggta
ctgagctttggtatccaggttgtgagtcgctgccggctgaggcacactgaggtgctgcct
gctgaggaagagaatgacagcctaggggctgatgggacccacggagctggtaccatggag
tctgcagccggtgtgctcatcaagcttttttgtgtgcatactaaggcattgcaagatgtg
cagatccgcttccagccacagctgaaccctgatgtggtggccccgctccctatccacact
gcccacgaggactttgctttccccacagcatttggagagtctcggccggaattgggctcc
gagggcctggagtccgctgctcacggctcccagcctgatctccgacgcatcgtggaactg
cctgcacccgctgacttcctcagtctaagcagtgagaccaagcccaagttgatgacacct
gacgctttcatgacaccgagtacctccctgcagcagatcgctgcatcccctagtaacagc
agcagcagcagcagcagcagtggcagcagcagcagcagcagcagctcctctctgacagct
gtgtccgccttgagcagtacctccgctgtagacccctccttgcctaggccccctgaggaa
ctgaccttgagccacaagctgcagctggatggcagtctgacaatgagcagcagcagcagc
ctgcaggcaagctcacgcagcctcctgcctggactgctcccaggtccagccgacaaattg
actcccaaagggcccggacaggtgcctactgctgcctctggactctccctggagctgcag
gaagtggagcctctggggctaccccaggcttcccccagccgtacccgctccccggatgtt
atctcttcggcttccactgccctgtcccaagacatccctgagatcgcatccgaggccctg
tcccggggctttggctcctctgctcctgagggccttgagccagacagtatggcctcagct
gcctcagcgctacacctgctgtccccacggccccggccggggcccgagcttgggccccag
gttggcctggatggaggccctggggacggggatcggcatagtaccccttctctcctggag
gtggccttgacccaagaggccacagcccctgacagtcaggtctggccgacagcaccagac
attactcgggagacctgtagcagcctggccgaaagcccccggaatggcctccaggaaaag
cacaagagcctggcctttcaccgacctccttatcacctgctgcagcaacatgacagccag
gacaccagcgcggaacaaagtgaccatgatgacgaggtggccagccttgcctctgctgca
gggggctttggcaccaaagttcccacgccacggctgcctgccaaagactggaagaccaag
ggatcccctcgggcctcacccaagctcaagaggaagggcaaaaaggatgacggggattca
gcagtcggatctcggctcatggagcaccaggtggcagagccccctgaggactggccagca
ataatttggcaacagcagagagaaatggcggagctgcagcacagccaagaagagctactg
cagcgtctgtgcacccaactcgaaggcctgcagagcactgtcgcaggccacgtagaacgt
gccctcgagtcccgacacgaacaggagcagcggcggctggagcgggcactggcagaaggg
cagcaacggggtgggcagctgcaagagcagctgacgcaacagctgtcccaggcgctgtct
tcagctgtggctgggcggctggagcgcagcctacgggacgagatcaagaagacagtgcca
ccatgtgtgtctaggagcctggagcctgtggcaggccaactgagcaactcagtggccacc
aagctcacagccgtggagggtagtatgaaagagaatatctccaagctgctgaagtccaag
aacttgacagatgccatcgcccgggccgctgcagacacattgcaggggccaatgcaggcc
gcgtaccgtgaagccttccagagtgtggtgctgcccgcctttgagaagagctgccaggcc
atgttccaacagatcaatgacagcttccgactgggcacacaggaatacttgcagcagcta
gagagccacatgaagagccggaaggcgcgagagcaggaggcacgggagcctgtgttggcc
cagctgcggggcctggtcagcaccctgcagggtgccactgagcagatggcagccactgtg
tccagcagtgttcgggctgaggtgcagcaccagctgcatgtggctgtgggcagcctgcag
gaatccattttagcacaggtgcagcgcattgttaagggtgaggtgagtgtggcactcaag
gagcagcaggccgccgtcacctctagcatcatgcaggccatgcgctcagctgctggcaca
cctgtccccactgccctcctcgactgccaggcccaacaagcccatatcctacagctgctg
cagcagggccacctcaatcaggccttccagcaggccctgacagctgctgacctgaacctg
gtgctgtatgtgtgtgaaactgtggacccaggccaggtttttgggcagccaccctgccca
ctctcccagcccgtgctcctttccctcatccagcagctggcctctgaccttggcactcga
actgacctcaagctcagctacctggaagaggcagtgatgcacctggaccacagtgacccc
atcactcgggaccacatgggctctgtcatggcccaggtgcgccagaagctattccagttc
ctgcaggttgagccacacaactcacttggcaaagtggcccggcgtctcagcctcatgcta
cacggccttgtgacccccagcctcccttag
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integrated database retrieval system
