Rhinolophus ferrumequinum (greater horseshoe bat): 117035546
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Entry
117035546 CDS
T07722
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117035546 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfq03019
]
117035546 (CNOT1)
Messenger RNA biogenesis [BR:
rfq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117035546 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117035546 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
117035546
NCBI-ProteinID:
XP_032985358
Ensembl:
ENSRFEG00010010002
LinkDB
All DBs
Position
15:complement(10780830..10857783)
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINDLKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttgttacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcaccagactcagtttctgattcaggagtgtgcgtcg
ctgatcacaaagccaaattttatttccacgttgtcctatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgctctcttgaattcttccagctcggat
ctcagaggttttgctgctcagtttatcaaacagaagcttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctctcccatctcctctttggacagaagggagcctttggagttggacag
gagcagatagacgcttttcttaagacgctgcgcagagattttccccaggaacgctgtccc
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagctaaaaccatgatggagagctctttggctgatttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgtaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggtagcgagggttttgggaatgatggctcgaact
cattcaggattaacagatggaattccattacagagtatctctgctcctggcagtgggatc
tggagtgatggaaaagataaaagtgatggagcacaggcacacacgtggaatgtggaagtc
ttgattgatgttctcaaagaactgaacccaagtttgaatttcaaggaagtaacttatgaa
ctcgaccatcctggatttcaaattcgtgacagtaaaggacttcataatgtggtttatggc
attcagaggggtctgggtatggaagtgttcccagtagacctcatatatagaccttggaaa
catgcagaaggccagctctcctttattcagcattcccttataaatccagagatcttctgt
tttgctgactatccctgtcatactgttgccactgatattctgaaagcaccacccgaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctgctgagactc
gcagaggtggggcaatatgaacaagtcaaacagctcttcagcttccctatcaaacactgt
ccagatatgctggtattggccttactacaaatcaacacctcctggcacaccttgcgccat
gaactcatctctactctgatgccaatttttctcggaaaccatcctaactctgctattatt
ttgcactatgcatggcatgggcagggacagtctccctcaatccgccaacttatcatgcat
gcaatggcagaatggtacatgcgaggggagcagtatgaccaggccaaattgtctcgaata
cttgacgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccttttgcc
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgacaagtgg
ctcacagataaaattcgagagcatggagagccttttatccaggcatgcatgactttttta
aagagacggtgcccttctattttgggtggacttgccccagagaaagatcagcccaaaagt
gctcaacttcctccagaaactctggcgacaatgttggcctgtttacaagcttgtgcaggg
agtgtttctcaggagttatcagaaaccatcctcactatggtagccaattgcagtaatgtt
atgaataaggccagacaaccgccacctggagttatgccaaaaggacgccctcctagtgct
agcagtttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggttttcctccaaatttg
ggttctgcattcagtacccctcagtcaccagcaaaagcatttccacccctttctacccca
aaccaaacaactgcattcagtggtattggaggactttcatcacagcttccagtaggtggt
cttggcacaggcagcctgactggtataggaactggggctcttggactccctgcagtgaat
aacgatccttttgtacagaggaaactgggcacctctggactgaaccagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagagatagatgatgaagcaaacagctatttccagagaatatataatcacccacca
catccaaccatgtctgttgatgaggtattagaaatgctacagaggtttaaagactctacc
ataaagagggaacgagaagtatttaattgtatgctaaggaacttgtttgaagaatatcgg
ttttttccccagtaccctgataaagagttacatataacagcctgcctgtttggtggaata
attgaaaaaggactggtcacttatatggcactaggtctggccctgcgatatgttcttgaa
gccttacgcaagccttttggatccaaaatgtattatttcggaattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcctctatcagtcac
tttatgcaatttccacatcatttgcaggagtatatcgagtatggacagcaatcgagagat
cctcctgtgaaaatgcagggctctatcacaacccctggaagtattgcactggctcaggcc
caggcccaggcccaggttccagcaaaagcgccccttgctggtcaggttagcactatggta
accacctccacaaccaccactgttgctaaaacggttacagtcaccaggccaactggagtc
agctttaagaaagatgtgccaccttctattaatactacaaatatagatacgttgcttgtg
gccacagatcaaactgaaagaattgtagagcccccagaaaatattcaagagaaaattgct
tttatcttcaacaatctctcccagtcgaatatgacacaaaaggttgaagaactaaaggaa
actgtgaaggaagaatttatgccatgggtttcacaatacctggttatgaagagagtcagt
attgagcccaactttcacagcctatattcaaacttccttgacacgctgaagaatccggaa
tttaataagatggttctaaatgagacctacagaaacatcaaagtgcttctgacctctgat
aaagctgcagctaatttctcagatcgttctttgctgaagaacttgggacattggctagga
atgatcacactagctaaaaataaacccatcttacatactgacttggatgtaaagtctttg
ctgctggaggcttatgttaaaggacagcaggagctgctctacgtagtgccctttgttgcc
aaagtcttagagtccagcattcgcagtgtggtttttaggccgcccaacccctggacaatg
gcaattatgaatgtattagctgagctacaccaggaacatgacttaaagttaaacttgaag
tttgagattgaggtcctctgcaagaaccttgcattagacatcaatgatctaaaacctgga
aacctcctaaaggataaagatcgcctgaagaacttggatgagcagctctctgctccaaag
aaagatgtcaagcagccagaagaactccctcctatcacaaccacaacaacttctacaaca
ccagctaccagtaccacctgtaccgccacggttccgccacagccacagtacagctaccat
gacatcaatgtctattctcttgcaggcctggcaccacacattactctaaacccaacaatt
cccttgtttcaggcccacccacagctgaaacagtgtgtgcgacaagcaattgaacgggct
gtccaggagttggtccaccctgtggtggatcgatcaattaagattgccatgactacttgt
gagcaaatagtcaggaaagattttgccctggattctgaagaatctcgaatgcgaatagca
gctcatcatatgatgcgcaacttgacagctggaatggctatgattacttgcagggaacct
ttgctcatgagcatatctaccaacctgaaaaacagttttgcctcagccctacgtactgcg
tccccacaacaaagagaaatgatggatcaggcagctgctcagttagctcaggacaattgt
gagttagcctgctgttttattcagaagacggcagtagaaaaagcaggccctgagatggac
aagagattagcaactgaatttgaactgagaaaacatgctaggcaagaagggcgcaggtac
tgcgatcctgttgtgttaacataccaagctgagcggatgccagagcaaatcaggctgaaa
gttggtggtgtggacccaaagcagctggctgtttatgaagaatttgcacgcaatgtacct
ggcttcttgcccacgaatgatttaagtcagcccacaggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcaaatttatgataagtgcattacggaactggag
cagcacctacatgccatcccaccaactttggccatgaatcctcaagctcaggctcttaga
agtcttttggaggttgtagtattatctcgaaattctcgggatgccatagctgctcttgga
ttgctccagaaggctgtagagggcttactagatgccacaagtggtgctgatgctgaccta
ctgctgcgctacagggaatgccacctcttggtcttaaaagctcttcaagatggccgggca
tatgggtctccgtggtgtaacaaacagatcacaaggtgcctaattgaatgtcgggatgaa
tataaatacaatgtggaggcggtggagttgctaattcgcaatcatttggttaacatgcag
cagtatgatcttcacctggctcagtcaatggagaatggtttaaactacatggctgtggca
tttgctatgcagttggtaaaaatcctgctggtggatgaaaggagtgttgcccatattact
gaggcagatctattccacaccattgaaaccctcatgagaattaatgctcattccagaggc
aatgctccagaaggattgccccagctgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcacggaggccctaactttatgatgcattctgggatttctcaagcctca
gagtacgatgatcctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcagggaatcctgaagactgatgac
ctcataacaaggttctttcgtctgtgcactgagatgtgtgtggaaatcagttaccgtgct
caggcagagcagcagcacaaccctgctgctaatcccaccatgatccgagctaagtgctat
cacaacttggatgcctttgtccgactcattgcactgctagtgaagcactcaggggaggcc
accaacactgtcacgaagattaacctgttgaacaaggtccttggtatagtagtgggagtt
ctcctacaggaccatgacgttcggcaaagtgagtttcagcagcttccctaccatcggatt
tttatcatgctgctcttagaactcaatgcacctgagcatgtattggaaaccattaatttc
cagacacttacagctttctgcaatacattccacatcttgaggcctaccaaagctcctggc
tttgtgtatgcctggcttgaactgatctcccatcggatttttattgcaagaatgctggca
catacgccacaacagaagggatggcctatgtatgcacagctactgattgatttattcaag
tatttagcacctttccttagaaatgtggaactcaccaaacctatgcaaatcctctacaag
ggcactttaagagtgctgctggttcttttgcatgatttccccgagttcctttgtgattac
cattatggattctgtgatgtgatcccacctaattgtattcagctaagaaatctgatcctg
agtgccttcccaagaaacatgaggctcccagacccatttactcctaatctgaaggtggat
atgttgagtgaaattaacattgcaccccggattctcaccaattttaccggagtgatgcca
cctcagttcaaaaaggacttggattcctatcttaaaactcgatcaccggtcacttttcta
tctgatctgcgcagcaacctacaggtatccaatgagcctggcaatcgctacaacctccag
ctcatcaatgcactggtgctctatgtggggactcaggccattgcacacatccacaacaag
ggcagcacaccttcaatgagcacgatcacccactcggcccacatggacatattccagaac
ctggctgtggacttggacactgaaggtcggtatctcttcttgaatgcaattgcaaatcag
ctgcggtacccaaatagccacactcactacttcagctgtaccatgctctacctttttgca
gaggccaacactgaagctatccaagaacagatcacaagggttctcttggaacggttgatt
gtaaataggccacatccttggggtcttcttattaccttcattgagctaattaaaaatcca
gcttttaagttctggaaccatgagtttgtacactgtgccccagaaattgaaaaattattc
cagtctgttgcacagtgctgcatgggacagaagcaggcgcagcaagtcatggaagggaca
ggtgccagttag
DBGET
integrated database retrieval system
