Rhodoferax ferrireducens: Rfer_0459
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Entry
Rfer_0459 CDS
T00334
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rfer_0459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfr03019
]
Rfer_0459
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_0459
Enzymes [BR:
rfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rfer_0459
Messenger RNA biogenesis [BR:
rfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rfer_0459
DNA repair and recombination proteins [BR:
rfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rfer_0459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABD68211
UniProt:
Q221U2
LinkDB
All DBs
Position
complement(468409..470265)
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AA seq
618 aa
AA seq
DB search
MILSIHLILQEVFGYDAFRGPQQAIIEHVVAGGDALVLMPTGGGKSLCYQIPAIAREQAG
QGITVVISPLIALMHDQVGALHEAGIKAEFLNSTLSGEQATQVERRLLRGDITLLYAAPE
RVTTPRFLAQLDSLYERGKLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYGSVPRIAL
TATADALTRADIVERLQLQDARLFISSFDRPNISYTIVEKRDATQQLLRFITSEHMGDAG
IVYCQSRKRVEDIANLLCDEGIAALPYHAGLEAKVRQANQDQFLRSEGIVMVATIAFGMG
IDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGQAAQAWMCYGLQDVVNQRRMIDESPAGE
EFKQGLRGKLDALLGLAEATDCRRVRLLHYFDEESKACGNCDNCLHPPAVWDGTDAARKL
LSTIYRVQQMGGSYGAVHIMDILRGKSTEKVTQRGHETLSTFGIGADLSEVQLRGVLRQL
IAIGAVAVDAQAFNTLQLTDASRAVLRGEVPVQLRASVSSPAERKAKRSSAVHAGSVGKT
PIALDAAAQTRYTALKAWRGEVAKEHNLPAYVIFHDATLAAIAERAPLSLDDLQGISGIG
AKKLEAYGEEVLRVMVSV
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
ttgattttgtccattcacctgatcctgcaagaagtctttggctacgacgcgttccgtggc
ccccagcaagccatcatcgagcacgtggtggcgggcggcgacgccttggtgctgatgccc
accggcggcggcaaatcgctgtgttaccagattccggcgatcgcgcgcgaacaagccggc
cagggcatcacggtcgtgatctcgccgctgatcgcgctgatgcacgaccaggtcggtgcg
ttgcatgaggccggcatcaaagccgagtttctcaactccaccttgtcgggcgagcaggcg
acgcaggtggagcgacggttgctgcgcggcgacatcaccctgctctacgcggcgcccgag
cgcgtcacgacaccgcgttttctggcgcagcttgattcgctgtacgagcgcggcaaactg
agcctgtttgccatcgacgaggcgcactgcgtgagccagtggggccacgacttccggcct
gaataccgcgctttgaccgtgttgcatgagcgttatggcagcgtgccgcgcatcgcgctg
acggccacggccgacgcactgacccgcgccgacattgtggagcggctgcagttgcaggac
gcgcgcctgtttatcagcagctttgaccgccccaacatcagttacaccatcgtcgagaag
cgagatgccacgcagcagttgctgcgtttcatcaccagtgagcacatgggcgatgctggt
atcgtttattgtcagtcgcgtaaacgggtggaagacattgccaatctgttgtgcgacgaa
ggcattgccgcgctgccctaccacgccggactggaagccaaggtgcgccaagcgaaccag
gaccagtttctgcgcagcgagggcattgtgatggtggcgaccatcgccttcggcatgggc
atcgacaagcccgatgtgcgttttgtcgcgcacctggacatgccgaaaaacatcgagggc
tattaccaggaaaccggccgcgccgggcgcgatggccaagccgcgcaagcctggatgtgc
tacggcctgcaagacgtggtcaaccagcgccgcatgatcgacgagagcccggccggcgaa
gaattcaaacagggcctgcgcggcaaactcgatgcgctgctgggtctggccgaggccacc
gattgccgccgtgtgcgcctgctgcactactttgacgaagagagcaaagcctgcggcaat
tgcgacaactgcctgcacccacccgccgtgtgggacggcaccgacgcggcgcgcaagctg
ctcagcaccatctaccgcgtgcagcagatgggcggcagttatggcgcggtgcacatcatg
gatattttgcgcggcaaaagcaccgagaaggtgacgcagcgcggccatgaaaccctgagt
acctttggcattggcgcggacttgagcgaagtgcaactgcgcggcgtgctgcgccagctg
attgccatcggcgccgtggcggtcgatgcccaggccttcaataccctgcaactcaccgat
gcctcacgcgccgtgctcaggggcgaggtgccggtgcagttgcgcgcctcggtatcgagc
ccggccgagcgcaaggccaaacgcagcagcgcggtccacgccggcagcgtcggcaaaacg
cccatcgcgctggatgccgcggcgcagacccgctacaccgccctgaaagcctggcgcggc
gaagtggccaaagaacacaacctgccggcctatgtgatttttcacgatgccacgctggcg
gccatcgccgagcgcgcgccgctgtcgctcgatgatctgcaaggcatcagcggcattggc
gcgaaaaagctggaggcttatggtgaagaggtgctgcgcgtgatggtgagcgtgtga
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