Rhodoferax ferrireducens: Rfer_0700
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Entry
Rfer_0700 CDS
T00334
Name
(GenBank) Orn/DAP/Arg decarboxylase 2
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr00300
Lysine biosynthesis
rfr00470
D-Amino acid metabolism
rfr01100
Metabolic pathways
rfr01110
Biosynthesis of secondary metabolites
rfr01120
Microbial metabolism in diverse environments
rfr01230
Biosynthesis of amino acids
Module
rfr_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
rfr_M00526
Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Rfer_0700
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Rfer_0700
Enzymes [BR:
rfr01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
Rfer_0700
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ABD68451
UniProt:
Q220V2
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Position
736703..737947
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AA seq
414 aa
AA seq
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MTLTERQLPVHAPMNQFSVREGELTVGGERLSLLAARVGQTPFYAYDRLLLRARVAALRG
VLPRTVKLHYAMKANPMPAVVGLMVGLVDGIDVASAGELKVALDAGANPLEISFAGPGKR
DAELRQAVASRVLINLESFREVAALEAICGELGLSARVAVRVNPDFELKGSGMKMGGGPK
QFGVDVEQIPELLGCIGRAGLSFEGFHLFAGSQNLRSESICEAQQKSYELALRLAQHAPA
PVRFLNLGGGFGIPYFPGEQRLDLAPIGDNLAQLVQRAQTELPDAALVIELGRYLVGEAG
VYVARIVDRKVSRGQVYLVADGGLHHHLSASGNFGQVIRKNYPVTIGNKADSRETETVSV
VGPLCTPLDLLAERMALPVAQVDDLVVVFQSGAYGASASPQGFLGHPACLEVLV
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgactctcactgaacgccaactgcccgtgcatgcccccatgaaccagttctccgtgcgc
gagggcgaattgaccgtgggtggcgagcgtttgtcattgcttgccgcgcgggtggggcaa
acgcctttttatgcctatgaccgtttgttgttgcgcgcccgggtggcagcgctgcgcggc
gtgctgcccaggacagtcaagctgcactacgcgatgaaggccaaccccatgcctgcggtg
gtgggtttgatggtcggtttggtggacggtattgacgtggcttctgcgggcgagcttaaa
gtggcattggatgccggcgccaacccgctggaaatcagctttgccggaccgggcaagcgc
gatgccgagttgcgccaggcggtggcgtcgcgcgtgctgatcaaccttgaatcgtttcgc
gaagtggcggcgctggaggccatttgcggcgaattgggcttgagcgcgcgcgtggcggtg
cgggtcaaccccgactttgaactcaagggttcaggcatgaaaatgggcggtggccccaag
cagtttggtgtggatgtggagcagattcccgagctgctgggctgcatcggccgtgccggt
ctgtcctttgaaggttttcatttgtttgccggttcgcagaatttgcgttcggagtcgatt
tgcgaagcgcagcaaaagtcttacgagctggcgctgcggctggcacagcatgcgccggcg
ccggtgcgctttctgaatctgggtggcggctttggtattccctactttccgggtgagcaa
cggcttgatctggcccctattggcgacaacctggcccaactggtccagcgggcgcagacc
gagttgcccgacgctgccctggtgattgaactgggtcgctacctggtgggcgaagccggg
gtttacgtggcccgcattgtggatcgcaaggtgtcgcgcgggcaggtgtatctggtggcg
gacggcgggctgcatcatcatttgtccgcgtccggcaactttggccaggtgatacgcaaa
aactacccggtgacgattggcaacaaggccgactcgcgggagacagaaacagtgtcggtg
gtcggacctttgtgcacgccgctggacctgctggccgagcgcatggctttgccggtggca
caggtcgatgatctggtggtggtattccagtcgggcgcttatggcgccagcgccagcccg
caaggctttttggggcatcccgcttgtcttgaagttcttgtttag
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