Rhodoferax ferrireducens: Rfer_0820
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Entry
Rfer_0820 CDS
T00334
Name
(GenBank) Holliday junction DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Rfer_0820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_0820
Enzymes [BR:
rfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rfer_0820
DNA repair and recombination proteins [BR:
rfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Rfer_0820
RecFOR pathway proteins
Rfer_0820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
Mg_chelatase
AAA_16
nSTAND3
AAA_22
AAA_14
TIP49
Rad17
AAA_3
NTPase_1
RNA_helicase
Bac_DnaA
DUF815
AAA_18
TsaE
Sigma54_activ_2
AAA_17
ABC_tran
NB-ARC
AAA_33
bpMoxR
AAA_28
AAA_24
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
ABD68570
UniProt:
Q220I3
LinkDB
All DBs
Position
complement(854163..855239)
Genome browser
AA seq
358 aa
AA seq
DB search
MSIQTDDFAAPPPKRILSGAPASPNEEAVERALRPKLLDEYVGQAKVREQLEIFISAARM
RDEALDHVLLFGPPGLGKTTLSHIIAHELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVL
FIDEIHRLSPVVEEILYPALEDYKIDIMIGEGPAARSIKLDLQPFTLIGATTRAGMLTNP
LRDRFGIVARLEFYSPEELASIVRRSAGLLKVPTDEKGGFEIARRSRGTPRIANRLLRRV
RDYADVKGAGEITLDIAHRALVMLDVDPQGFDLMDRKLLEAVIHRFDGGPVGLDNIAASI
GEERETIEDVIEPYLIQQGYLQRTPRGRIATLAAYKHLGVTPPAAQSGGDMFGAMRPE
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
gtgagcattcaaaccgacgactttgccgccccgccgcccaaacgcatcctgtcgggcgcg
cccgcctctcccaacgaggaggcagttgagcgcgccttgcggcccaagctgctcgatgag
tatgtcgggcaggccaaggtgcgcgagcagcttgaaatatttatcagtgccgccaggatg
cgcgacgaggcgctcgaccatgtgctgttgtttggcccccccggcctgggcaaaacaacg
ttaagtcacatcattgcacacgaactcggcgtcaacttgcgccaaaccagcggcccggtg
ctggaaaaaccgaaggatctggcggcgctgctgaccaatctggaaaagaatgatgtgctg
ttcatcgacgagattcaccgcctgagcccggtggtggaagaaatcttgtaccccgcgctg
gaagactacaagattgacatcatgatcggcgaaggcccggcggcgcgctcgatcaagctc
gacctgcaacccttcaccctgatcggtgccaccacccgcgccggcatgctgaccaacccg
ctgcgtgaccgttttggcattgtggcgcggctggagttctactcccccgaagaactggcg
agcattgtcaggcgcagtgccggcctgctcaaggtgccgaccgatgaaaagggaggcttt
gagattgcccggcgttcccgtggcacgccgcgcattgccaaccgcctgctgcgccgggtg
cgcgattacgccgatgtgaaaggtgcgggcgagatcacgctcgatattgcccaccgcgcc
ctggtcatgctcgacgtggatccacaaggctttgacctgatggaccgcaagctgctggaa
gcggtgatccaccgctttgacggcggcccggttggcctggacaacattgccgccagcatt
ggcgaagagcgggaaacgattgaagacgtgattgagccctacctgatccagcaaggttac
ctgcagcgcacgccgcgcgggcgtattgccacgctggcggcgtacaaacacctgggcgtt
acgccgcctgcggcgcagagcggtggcgacatgtttggcgccatgcggccagagtag
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