Rhodoferax ferrireducens: Rfer_0822
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Entry
Rfer_0822 CDS
T00334
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Rfer_0822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_0822
Enzymes [BR:
rfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rfer_0822
DNA repair and recombination proteins [BR:
rfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Rfer_0822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
PriA_C
PriA_3primeBD
ResIII
Helicase_C
Zn_ribbon_PriA
HypA
ADDB_N
AAA_19
AAA_22
DUF5817
Motif
Other DBs
NCBI-ProteinID:
ABD68572
UniProt:
Q220I1
LinkDB
All DBs
Position
856890..859091
Genome browser
AA seq
733 aa
AA seq
DB search
MTHQLAVLVHTPVHSAVAGTLSYVSELPLTVGSLVRVPLGQRELLGVVWDAPLDSPAASF
DPQKLRPISSALDGIAPLSASWRQLVTFAAHYYQRSVGEVALAALPPQLRDLSTQQWGRR
LKRHAKAGAVGEPALVDASELVALSPEQTGAIAQFNTNSGPFLLFGATGSGKTEVYLQCV
EQLLVREPDAQAMVMVPEINLTPQLEARFMARFAPMYGDGAVVSMHSGMTPAQRLKSWLA
AHSGAARIVLGTRMAIFASLPKLKLIIVDEEHDPSYKSGEGARYSARDLAVYRGRLDGAK
VMLGSATPSLESWHHSRPAAEGGRYLRLVMPSRIGSITALPTAQGDTTRLVNDAAAASAG
LPVVRRVDMNHQPKHCVFSPPLLAAIMERIARGEQSMVFLNRRGYAPVLHCADCDWKSEC
PHCSAYRVFHKIDRTLRCHHCGYAERVPRACPACGNPDIAPMGRGTERLEEHLAELLLEV
RRPNSVSDQWPEGEPVRIVRIDADSTKLKGELQAQLARVHSGEVDVLVGTQMIAKGHDFR
RITLVAAINPDNALFSSDFRAPERLFSLLMQAAGRAGRDADISGQSEMWVQTFHPQHPLF
EALKRHDYPAFAAEQLKEREQAGMPPFSFQALVRAEARTQEVAQGFLSAASAAATRMAQA
DQLLAHLTLYPAVPMSIQRVANVERAQMLIESPSRAALQRFLAAWQVVLHATRKQPEGRG
LLRWAIDVDPLAI
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgacccatcagcttgcagttctggttcacacgccagtccacagtgccgtcgccgggacg
ctgagctatgtcagtgagttgccacttaccgtcggtagcttggtgcgtgtgccactgggt
cagcgtgagctcttgggcgtggtgtgggacgcgccacttgattccccagcggccagcttt
gatccgcagaaactgcgtcccatcagcagtgccctggacggtattgcgccgctgagcgcc
agctggcgccagctggtgacctttgcggcccattattaccagcgctccgtgggcgaggtg
gcgctggcagccttgccgccacaattgcgcgacctgagcacccagcagtggggccgtcgc
ctcaaacgtcacgccaaggcgggggcagtgggcgagcctgccctggttgatgcttctgaa
ttagtagcgcttagtccagagcagacgggggctatagcccaatttaatacaaattcaggg
ccgtttttgttgttcggcgcgaccggcagcggcaaaaccgaagtctatttgcaatgcgtc
gaacagttgctcgtgcgcgagcccgatgcccaggcgatggtgatggtgcccgagatcaac
ctcacgccgcagttggaggcgcgtttcatggcgcggtttgctcccatgtatggtgacggc
gccgtggtgtccatgcacagcggcatgacgccggcgcagcgtttgaagagctggctcgcg
gcccacagcggagccgcccgcatcgtgctgggcacacgcatggccatctttgcctcgctg
cccaaactcaagctgatcatcgtggacgaggagcacgacccgagttacaagagcggggag
ggcgcccgctactcggcgcgtgatctggcggtgtaccggggccggctcgacggcgccaag
gtcatgctgggctcggcaacaccgtcgctggagagctggcaccacagtcgtccggcggca
gagggtgggcgctacctgcgcctggtcatgcccagtcgcatcggcagcatcaccgcgctg
cccaccgcgcaaggcgacacaacacggctggtgaacgatgcggccgccgccagcgctggc
ctgcccgtggtgcgccgggtggacatgaatcaccagcccaagcattgcgtgttttcgcca
cctctgctggccgccatcatggagcgcatcgcgcgcggcgaacaaagcatggtgttcttg
aaccggcgcggctacgccccggtgctgcactgcgccgactgcgactggaaaagcgaatgc
ccgcattgcagcgcctaccgggtctttcacaaaatcgaccgcaccctgcgttgccaccac
tgtggctatgccgagcgcgtgccccgtgcctgtcccgcctgcggcaaccctgacatcgcg
ccgatgggccgtggcaccgagcggctggaagaacacctggccgagctgctgttggaggtg
cgtcgccccaactcggtgtcagatcaatggcccgagggcgaaccggtgcgcatcgtgcgc
atcgatgccgacagtaccaaactgaaaggcgagctccaggcgcagctggcccgggtgcat
tcgggtgaggtggacgtgctggtcggcacacagatgattgccaaagggcacgactttcgc
cgcatcacgctggtggccgccatcaaccccgataacgcgctgttttcgagtgacttccgg
gcgcccgagcgcctgttcagcctgctgatgcaagccgccggccgcgccgggcgcgacgcc
gacatcagcggccaaagcgagatgtgggtgcagacctttcacccgcaacatccgctgttt
gaggccctgaaacgccacgactacccggccttcgccgccgagcaactgaaagagcgcgag
caggccggtatgcctccgttcagttttcaggcgctggtgcgggcggaggcgcgcacgcaa
gaggtggcgcaaggttttttgagcgcggccagtgctgccgccacccggatggcacaagcg
gaccagttgctggcgcacttgaccctgtacccggcggtgcccatgagcatccagcgcgtg
gccaatgtggagcgggcgcaaatgctgatcgagagcccgtcacgcgcggcgctgcaacgc
tttttggcggcctggcaggtggtgttgcacgcgacccgtaaacagcccgaggggcgcggc
ttgctgcgctgggccattgacgtggatcctttggctatttga
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