Rhodoferax ferrireducens: Rfer_1088
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Entry
Rfer_1088 CDS
T00334
Name
(GenBank) Lytic transglycosylase, catalytic
KO
K08309
peptidoglycan lytic transglycosylase [EC:
4.2.2.29
]
Organism
rfr
Rhodoferax ferrireducens
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rfr01011
]
Rfer_1088
Enzymes [BR:
rfr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Rfer_1088
Peptidoglycan biosynthesis and degradation proteins [BR:
rfr01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Rfer_1088
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Gene cluster
GFIT
Motif
Pfam:
SLT
Motif
Other DBs
NCBI-ProteinID:
ABD68829
UniProt:
Q21ZH4
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Position
1162563..1164524
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AA seq
653 aa
AA seq
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MTLSANPAAQAQSRVAGTTAADQTILEMNQAFKKGNSKRLSELLPQMRDHTLEPWAAYWE
LRARLDTASPAEIQYFLNRFAGTYQEDRLRNDWLLLLGQRQEWGTFMAEYPNFRMNDDRS
VQCYALLTDFKSSERDVVQQVEDLWLAQRDADDGCAAAADQQLKARKLQPQTVWLRARQG
FENDNLRIATQAVGLLNAEWANTVSAIYTRPEHYLEGKLLALRLRTKELVTLAMIRLAVK
DPAAAAVEIDKLRWKTQLSQEERSWVWGVIGKRAAMRLSDDALAYFMKGQDKFMQADQLA
WKVRAALRAGNWAQVVAATSAMSESQRQDAAWVYWRARALLKLAKTQADHVEPQRLLQSI
AGVRGFYEQLALEELGQRVTVPAAPAALTAEEKDAARLDPGLGRSLYAIQIGLRSEGVRE
WNYSVNMHQRGGMNDRELLAAADLACQHEVWDRCINTSERTKSVIDFAQRFPMPHKDAVL
QRSSEIGLDAAYVYGLIRQESRFIVDARSGVGAAGLMQVMPATARWTAKKIGLVNFKPQQ
LSERDTNIAIGTGYLKLVLDNFDGSMPMAAAAYNAGPGRPRSWRGQAGAPTLEAAIWAEN
VPFTETRDYVKKVLSNTTSYAALISGQPQSLKSRLGLIGPRGAGAAPVDSDLP
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
ttgaccctgtcggcaaatccggcggcgcaggcgcaatccagggtggcaggcaccacggcc
gccgaccagactattctggagatgaaccaggccttcaaaaagggcaatagcaagcgtctg
agcgagctgttgccccagatgcgtgaccacaccctggagccctgggccgcttattgggaa
ttgcgtgcccgcctggacaccgcaagcccggctgaaattcagtattttttgaaccgcttt
gccggtacctaccaggaggaccgcttgcgcaacgactggctgctgctgctcgggcaacgg
caggaatggggcactttcatggccgagtaccccaatttccgcatgaacgatgaccgttcg
gtccagtgctacgccttgctgaccgacttcaagtcaagcgaacgcgatgtggtgcaacaa
gtggaggacctgtggctggcccagcgcgatgccgatgacggctgtgcggccgccgcagac
cagcagctcaaagccagaaagctccagccccagacagtctggttgcgcgcgcgccagggg
ttcgaaaacgacaacctgcgcatcgccacccaggcggttggcctgctcaatgccgaatgg
gccaacacggtcagcgcgatctacacccggcccgaacactacctggaaggcaagctgctg
gcgctgcggctgcgcaccaaagagctggtcacgctggccatgattcgcctcgctgtcaaa
gaccctgccgctgctgccgtcgagattgacaaactgcgctggaaaacccaactcagtcag
gaggagcgcagttgggtctggggcgtgatcggcaagcgtgccgccatgcgcttgtcggat
gacgccttggcctatttcatgaaagggcaagacaagttcatgcaggccgatcaactggcc
tggaaggtgcgcgcggcgctgcgggcaggcaactgggcgcaggtggtggctgccacgtcg
gccatgagcgagagccagcgccaggacgccgcctgggtctactggcgcgcgcgcgccctg
ctgaagctggccaagacgcaggcggatcatgtcgagccgcagcgcttgttgcaaagcatt
gctggcgtgcgcggcttctacgagcaactggcactggaagaacttggccagcgcgtgacc
gtgcccgcagcgcccgccgcgttgacagccgaagaaaaggacgcggcccggctcgacccc
ggccttggtcgcagtctgtatgccattcaaatcggcttgcgcagcgagggcgtgcgtgaa
tggaattacagcgtcaatatgcaccaacgcggcggcatgaacgatcgcgaactgctggcc
gctgccgacctggcctgccagcatgaggtgtgggaccgctgcatcaacaccagtgagcgg
actaaaagtgtgatcgatttcgcgcagcgctttcctatgccacacaaggacgcggtgctg
cagcgcagctcggaaatcgggttggacgcggcctacgtgtatggcttgatccggcaggaa
agccgcttcatcgtggacgcccgttcgggtgtcggtgccgccgggctgatgcaagtgatg
ccagcgacggcccgctggaccgccaaaaaaatcgggctggtcaacttcaagccgcaacag
ctcagtgagcgtgacaccaacattgccattggcaccggctacctcaagttggtgctggac
aactttgacggctccatgcccatggccgccgccgcctacaacgccgggcccgggcgcccg
cgcagctggcgcggtcaagctggggcgccgacgctggaagccgccatctgggccgagaac
gtgccgttcaccgagacccgtgactatgtgaaaaaagtcttgtccaacaccaccagctac
gccgcgctcatttccggtcaaccgcagtcgctgaaaagccgcctcgggctgatcgggcca
cgcggtgccggggcggcaccggtcgattccgacttgccttga
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