Rhodoferax ferrireducens: Rfer_1325
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Entry
Rfer_1325 CDS
T00334
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03030
DNA replication
rfr03410
Base excision repair
rfr03420
Nucleotide excision repair
rfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rfer_1325
03410 Base excision repair
Rfer_1325
03420 Nucleotide excision repair
Rfer_1325
03440 Homologous recombination
Rfer_1325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rfr03032
]
Rfer_1325
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_1325
Enzymes [BR:
rfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rfer_1325
DNA replication proteins [BR:
rfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rfer_1325
DNA repair and recombination proteins [BR:
rfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Rfer_1325
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rfer_1325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
ABD69059
UniProt:
Q21YU4
LinkDB
All DBs
Position
1420985..1423858
Genome browser
AA seq
957 aa
AA seq
DB search
MNDSFTDSPAKPKTLLLVDGSSYLYRAFHAMPDLRAVPGDPSSAPTGAIRGMINMLQSLR
KEVPADYAACIFDDKGPTFRDALYPEYKAHRSPMPDDLRSQIEPIHEVVRLMGWKVLAVP
GVEADDVIGTLAVTAARQGIEVIVSSGDKDLAQLVNSHITIIDTMNGRRRDVAGVEAEFG
VPPQLMVDFQTLVGDVIDNVPGVPKVGPKTAAKWLQEYGSLDAVVANADQIKGVVGENLK
KSLDWLPLGRQLLTIKTDCDLDGWMPDLPALDSIATGTMDTGALAIFYEKYGFKGLARTL
GGGAASVASKASSGFGVGPKERSDAGSDPNSVRQLTREPGLFDEPEAASDPIPSSVTNLH
YDTILTWEAFDRWLAKVQAADLVALDTETTSLDEMRAQIVGISFSVTPGEAAYIPLAHAY
PDAPAQLPLADVLAKLKPWLQDASHKKLGQHVKYDRHVFANHGIEVQGYAHDTMLQSYVL
EVTKPHGLASLAERHLGRSGISFEDLCGKGANQICFDQVDIAQAAQYSCEDSDMTLDVHR
ALWPLLQANDKLRFIYELEIASSEALYRIERNGVLIDGPTLAVQSHELGQRILQLEKEAH
ELAGQPFNLSSPKQIAEIFFTKLGLPVVKKTPTGSPSTDDEVLQKLAEDYPLPAKILEHR
GLAKLKGTYTDKLAQLAHPRTGRVHTHYAQAIAVTGRLSSLEPNLQNIPVRTPEGRRVRE
AFVAPPGSVIASADYSQIELRIMAHISGDAALLLAFHDGIDVHRATASEIFGVDRAQVTS
EQRRYAKVINFGLIYGMSAYGLAKALSIDNTAAKNYIERYFDRYPGVKNYMEHTRALAKR
QGYVETVFGRRLYLPEINSPNGPRRSGAERAAINAPMQGTAADLIKLSMVKVQQVIDEEK
RATKMIMQVHDELVFEVPESEIDWVRHEVPRLMAGVAHLKVPLLAEVGVGANWDKAH
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgaatgactcctttactgactccccggccaagcccaaaaccttgcttttggtcgatggt
tccagctacctgtaccgggcctttcacgccatgccggacctgcgcgccgtaccgggcgac
ccgagcagcgcgcccacgggtgccatccgcggcatgatcaacatgctgcaaagcctgcgc
aaagaggtgcccgctgactatgccgcctgtatttttgacgacaaaggcccgacctttcgg
gatgcgctgtaccccgaatacaaggcacaccgctcgcccatgcccgatgatttgcgctcc
cagatcgagccgattcatgaagtcgttcgcctgatgggctggaaagtgctggctgtgccc
ggtgtcgaagccgatgacgtgatcggcacgctggcggtgacggcggcgcgccagggtatc
gaggtgatcgtgagcagcggtgacaaggatctggctcagttggtcaactcgcacatcacc
atcatcgacaccatgaacggccgccgccgcgacgtggccggggtcgaggccgaatttggc
gtgccgccgcagctgatggtggactttcagaccctggtgggcgacgtgattgacaacgtg
ccgggcgtgcccaaggtcggccccaaaaccgcggccaagtggttgcaggaatacggttcg
ctcgacgccgtggtggccaacgccgaccagatcaaaggcgtggtgggcgagaacctgaag
aagtcgctggactggttgcccttgggtcgccaactgctgaccatcaagaccgactgcgat
ctggatggctggatgcctgatttgcccgctcttgattcaatagctaccggtacaatggat
acgggggctctggctattttttatgaaaaatacgggttcaaggggctggcccgcaccttg
ggtggcggggcggccagcgtggcaagcaaggcaagctcaggatttggggtcggacccaag
gagcgaagcgacgctggctcagaccccaattccgtgcgccaactgacccgtgaaccgggc
ttgttcgacgagccagaagccgccagcgaccccatcccctccagtgtgaccaacctgcac
tacgacaccatcctgacctgggaagcgtttgaccgctggctggccaaagtgcaagcggca
gacctggtggcgctggacaccgaaaccacgtcgctcgacgagatgagggcccagattgtc
ggcatcagtttcagtgtgacgccgggcgaggccgcctacattccgctggcgcacgcctac
cccgatgccccggcgcagttgccgctggccgatgtgctggccaaactcaagccctggttg
caagacgccagccacaaaaagctgggccagcacgtcaaatacgaccgccacgtgtttgcc
aaccacggcatcgaggtgcaaggctacgcgcacgacacgatgctgcaaagttatgtgctg
gaggtgaccaaaccccacggcctggccagcctggccgagcggcacctgggacgcagcggc
atcagctttgaggatttatgcggcaagggggccaatcaaatctgttttgaccaggtggat
attgcccaagccgcccagtattcatgtgaagactccgacatgacgctggacgtgcaccgg
gcgctgtggccgctgctgcaggcgaatgacaaattgcgcttcatctacgagctggaaatc
gccagcagcgaagcgctctaccggatcgagcgcaacggcgtgctgatcgacggccccacg
ctggcggtgcagagccacgagctgggccagcgcattttgcagcttgaaaaagaagcacac
gagctggccgggcaaccctttaacttgagcagcccgaagcagattgctgaaattttcttc
accaagctcggcctgcctgtcgtcaagaaaacccccaccggctcacccagcaccgacgat
gaagtgctgcagaaattggccgaagactacccgctaccggccaaaattctggagcaccgg
ggcctggccaagctcaaaggcacctacaccgacaaactggcgcaactcgcgcacccgcgc
accggtcgcgtgcacacgcattacgcgcaggcgattgccgtgaccgggcgcttgagcagc
cttgagcccaatctgcaaaacattcccgtgcgcacccccgaggggcggcgtgtgcgtgag
gcgtttgtggcaccacccggcagcgtcattgccagcgccgattacagccagattgagctg
cgcatcatggcgcacatcagtggcgatgcggccctgctgctggcgtttcatgacggcatc
gacgtgcaccgcgccaccgcctctgaaatctttggtgtggacagggcccaggtcaccagc
gagcagcgccgctacgcgaaagtcatcaactttggcctgatttacggcatgagtgcctac
ggcctggccaaagcgttgagcattgacaacaccgccgccaaaaactacatcgaacgttac
tttgaccgctaccccggcgtgaaaaactacatggaacacacccgggcgctcgccaagcgc
caagggtatgttgaaaccgtgttcggccgccgcttgtatctgcccgagatcaactccccc
aacggcccgcgtcgcagcggcgccgagcgcgccgccatcaacgcgcccatgcagggcacg
gcggctgatttgatcaagctcagcatggtgaaagtgcagcaagtgattgatgaagaaaaa
cgggccaccaagatgatcatgcaggtacacgacgagctggtgtttgaagtgcccgagtcg
gaaatcgattgggtgcgccatgaggtgcccaggttgatggcgggggtggcgcacctgaag
gtgccgctgctggccgaggtgggggtgggcgcgaattgggacaaggcgcactga
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