Rhodoferax ferrireducens: Rfer_1376
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Entry
Rfer_1376 CDS
T00334
Name
(GenBank) Deoxyribodipyrimidine photo-lyase type I
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
rfr
Rhodoferax ferrireducens
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_1376
Enzymes [BR:
rfr01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Rfer_1376
DNA repair and recombination proteins [BR:
rfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Rfer_1376
Prokaryotic type
Rfer_1376
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
ABD69110
UniProt:
Q21YP3
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All DBs
Position
complement(1488606..1490084)
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AA seq
492 aa
AA seq
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MNKQFDSGLMWFRRDLRVIDNAALCLALAACRQLHCVFVFDRDILDTLPRADRRVEFIRA
SLCELDVALGQLSGKAGVGLIVRHAVASEEIVTLAKTLQVQAVFAAHDYEPQALARDARV
RGALAHVGIVLHTCKDHVIFENREILSKTGTPYGVFTPYKNTWLATVTPQHLRHHDATPV
AQALVPRPEGLQQPVPTLAAIGFEKTNLSQLKIPTGASGGARLFEDFFERMDSYHETRDL
PAVKGPSYLGVHLRFGTVSVRQLAATALQRQIQGSRGAAVWLGELIWRDFYFSILANFPH
VAQGAFKPEYDAIKWEHGKHADSLFQAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVAG
SFLVKDLGIDWRWGEKYFARHLNDFDLAANNGGWQWVSSSGCDAQPYFRIFNPVTQSEKF
DADGKFIRRYLPQLARLPSKVIHAPWTAQALELQMEGVTLGQNYPAPIVAHAAARALTLQ
RYAVVKKHQAAT
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagcaattcgattctggtttgatgtggttccgccgtgacctgcgggtgatcgac
aacgccgccttgtgcctggcgctggcggcctgccgccagcttcactgcgtttttgtcttt
gaccgtgacatcctcgacaccctgccacgcgctgaccgccgggtcgaatttatccgggcg
tccttgtgtgaactggacgtggcattgggccagctcagcggcaaggcgggtgtcggcctg
atcgtgcgccacgccgtggccagcgaggaaatagtcacactggccaaaacactgcaggtg
caggcggtttttgcggcccatgactacgagccgcaagcgctggcacgcgatgcccgggta
cggggtgccctggcgcacgtcggtattgtcctgcacacctgcaaggatcatgtgattttt
gaaaatcgcgagattctgagcaaaaccggcacaccctatggcgttttcacaccctacaag
aacacctggctggcaacggtaacaccgcagcatttgcgccaccatgacgccacaccggtt
gcgcaggcgctggtcccccgacctgagggcctgcaacaaccggtgccgacactggccgct
atcggctttgaaaaaaccaacctgagtcaactcaagattccaaccggggcgtcgggcggc
gcccggctgtttgaagatttttttgaacgtatggacagttaccatgaaacaagggacttg
ccagcggtcaagggtccgagctatcttggtgtgcacctgcgctttggcacggtgtcggtt
cgccaactggctgccaccgccttgcaacggcagattcagggtagccgaggcgcggcggtc
tggctgggagaattgatctggcgggatttttatttctcgattctggctaattttccgcac
gtggcacaaggcgccttcaagcccgagtacgacgcgatcaaatgggaacacggcaagcac
gctgattccctgttccaagcctggtgcgagggacgaaccggttatccgctggtggatgct
gccatggcccagatcaaccagactggctacatgcacaatcgcctgcgcatggtggcgggc
agctttttggtgaaagacctcgggattgactggcgctggggcgaaaaatactttgccagg
cacctcaatgactttgacctggcggccaacaacggtggctggcagtgggtcagttccagc
ggttgcgatgcgcagccgtacttcaggattttcaatccggtgacccaaagtgaaaagttt
gatgccgacggtaaattcatccgccgctacttgccacaactggcccgactaccgagcaaa
gtcattcacgcgccgtggaccgcccaagcgcttgagctgcaaatggagggcgtgacgctg
ggccaaaactaccccgcgccgatcgtggcgcacgctgcggcacgtgcgctgaccttacag
cgctacgctgtcgtcaaaaagcaccaagctgccacctga
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