Rhodoferax ferrireducens: Rfer_1422
Help
Entry
Rfer_1422 CDS
T00334
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rfr
Rhodoferax ferrireducens
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rfr03016
]
Rfer_1422
Enzymes [BR:
rfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Rfer_1422
Transfer RNA biogenesis [BR:
rfr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Rfer_1422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
S1
Motif
Other DBs
NCBI-ProteinID:
ABD69155
UniProt:
Q21YJ8
LinkDB
All DBs
Position
1529404..1530882
Genome browser
AA seq
492 aa
AA seq
DB search
MNSNHSHPHHRSDLVRIATRAMSERGLEPEFPARVETELAAIKGPGSEVGPDIHDLTDLL
WCSIDNDDSLDLDQLTVCEVLDQGVVRLWVAIADVDALVKKGSAIDGHALTNTTSVYTSA
RIFPMLPERLSTDLTSLNFAQERLALVTEMVFNADASLAGATVYRARVRNKAKLDYDAVS
AWIESDGALPAAAAAVPGMEAQLRTQDALAQQLRVRRRLEGSLELETFQPRAVFDGEQVV
DIRQQVQNRARQLIEEVMIATNGCTARYLAGRGGASLRRVVRSPERWLRIVAVAQEYGET
LPAEPDSKALEAFLAKRHQADPLRFPDLSLVIVRLMGSGEYVVETPGGPPIGHFGLAVRD
YTHSTAPNRRFPDLITSRLLKAALAGKPQPYSNAELAELALHCTRQEDSAQKVERRMRKS
EAALLLESHVGQRFDAIVTGSTTDGIWVRIFTPPAEGKLVRGKTSLKVGDKVRVKLVATD
VDRGFIDFVTTD
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaactccaaccattcccatccccaccaccgctccgacctcgtccgcatcgccacccgc
gccatgtccgagcgtgggcttgaacccgagttcccggcgcgtgtcgagaccgaactggct
gccatcaaaggacccggcagcgaggtcggtcctgatattcacgatctcactgatttgctg
tggtgctccatcgacaacgacgattcgctcgatctggatcagctcaccgtctgcgaggtg
ctggaccaaggcgtggtgaggctgtgggtggccatcgccgatgtggacgcgctggtcaaa
aagggcagcgccattgatgggcatgcgctcaccaacacgacttcggtgtacacgtcggcc
cgcattttcccgatgctgcccgagcgcctgtccaccgatctgacctcgctcaactttgca
caggaacggctggcgttggtgaccgagatggtcttcaacgccgacgcctcgctggcgggc
gccacggtgtaccgggcccgggtgcgcaacaaggccaagctggactacgacgctgtcagc
gcctggattgaaagtgacggcgcactgccagccgccgcggccgcggtgccgggcatggag
gcgcaacttcgcacacaggacgcgctggcccagcaactgcgcgtgcgccggcgtctagaa
ggctcgctggagctggagactttccagccgcgcgccgtgtttgacggtgagcaggtggtt
gatattcgccagcaggtgcaaaaccgcgcgcgtcagttgattgaggaagtgatgattgcc
accaacggctgcaccgcacgctacctggcagggcggggcggcgcctcgctgcggcgcgtg
gtgcgctcgcccgagcgctggctgcgcatcgtggccgtggcccaggagtacggcgaaacc
ctgccggccgagcccgattccaaagcgttggaagcttttctggccaagcgccaccaggcc
gacccgctgcgctttcctgatctgtcgcttgtcatcgtgcggctcatgggttcgggcgag
tatgtggtggaaacgcccggtggaccgccgatcgggcactttggcctggctgtgcgcgac
tacacccactccacggcaccgaaccggcgtttccccgacctgatcacgtcgcgcctgctc
aaggcggcgctggccggcaaaccgcagccgtattccaatgctgaactggccgagctggcc
ctgcactgcacccggcaggaagactcggcccagaaggtggagcggcgcatgcgcaagtca
gaggcggcactattgctggagtcccacgtcggccagcgctttgacgccatcgtgaccgga
agtaccacggacggtatctgggtccggattttcactccgcccgccgagggcaaactggtg
cgtggcaaaaccagcctcaaggtcggcgacaaggtccgcgtcaagctggtggccaccgac
gtggatcgcggttttatcgatttcgtaacgacggattga
DBGET
integrated database retrieval system
