Rhodoferax ferrireducens: Rfer_1558
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Entry
Rfer_1558 CDS
T00334
Name
(GenBank) sigma 70 (RpoD)
KO
K03086
RNA polymerase primary sigma factor
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Rfer_1558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfr03021
]
Rfer_1558
Transcription machinery [BR:
rfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Rfer_1558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
SPO22
DUF6522
GerE
Motif
Other DBs
NCBI-ProteinID:
ABD69290
UniProt:
Q21Y63
LinkDB
All DBs
Position
complement(1682914..1685265)
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AA seq
783 aa
AA seq
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MPAQNTKKPVPSAAKPVANAKPAKAVPAVPPKSTTQKPTTKEKLVIASKSPAKAPSVELK
KAVPAAVVAEVIIKKKPGRPPKAAAVESDTESKPGAKRGRKAKNATELTSTDDLDMADIE
ADLVGEPVATGEKVKPLRMKISKAKERALMKEFGLDETVLSEEDMAKRRQRLKALIKLGK
TRGYLTHGEISDHLPDKLVDAETLEVVISMLNDMGVAVYEQTPDAETLLLNNNVSTAATE
EEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMAMMEA
ISASPATIAEILRLSEDIREGKVVITTIVDGFSNPNEADDYVAEEDFDEFDAADDDDGKG
GSKALTKKLEELKNEALSRFDRLRELFEKIHTIYNKEGYGTPSYIKTQKALSEELMSIRF
TAKTIEKLCDLVRSQVDDVRKKERELRRIIVDKCGYPQENFIADFSGRDKHGNKVASQLL
NLKWIEKQAASGKHWGPIMARNIPPVQDLQQKLTDLQSKVVVPLDQLKDINKRMNEGEYS
SRAAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA
TWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASVLAERMEIPE
DKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDAANTAPMEAAMQAGLRDVVKDILDSL
TPREAKVLRMRFGIEMTSDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFT
DNL
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctcaaaacaccaagaagcctgtcccgtccgctgccaaaccggttgccaacgca
aagcctgcaaaagcagtgccagcagtgccgcctaaatccaccacccaaaagccaactacg
aaagaaaaattagtgatcgcatccaagtcccctgccaaagcaccgtcggttgaattgaag
aaggctgttcctgcggcagttgtggctgaagtcattatcaagaaaaagccgggccgaccg
cccaaagccgctgctgtcgaatccgacaccgagtcaaaaccaggggccaagcgagggcgc
aaggcaaaaaatgcgactgagttgaccagcacggacgatctggatatggctgacattgaa
gccgatctggttggcgagccggtagcgacaggtgaaaaggttaaacctttgcgcatgaag
atcagcaaggccaaagagcgtgcgctgatgaaagagtttggcctggacgaaacggtactg
tccgaagaagacatggccaagcgccgtcaacgcctcaaggccctgatcaagctcggaaag
acacgcggctatttgacgcatggtgaaatttccgatcacctgcccgacaaacttgtcgac
gctgaaacgcttgaggtcgtgatctcaatgctcaacgacatgggtgtggcggtgtatgag
caaacgccggacgccgagacactgctgctcaacaacaacgtctcgactgcagccaccgaa
gaagaagccgaagaagaggccgaggccgcgctgtccacagtggacagcgagtttggccgc
accaccgacccggtgcgcatgtacatgcgtgaaatgggcacggtggagttgttgacacgc
gaaggtgaaatcgaaatcgccaagcgcatcgaaggtggcttgatggccatgatggaggcg
atttcggcctcccctgccaccatcgccgagattcttcgcctgagtgaagacatccgcgaa
ggcaaggtcgtcatcaccaccatcgtggacggtttttccaacccgaatgaagccgacgac
tatgtggccgaggaagattttgacgagttcgatgcggccgacgatgacgacggcaaaggt
ggctccaaggcattgacaaaaaaactggaagagctcaaaaacgaagcactgagccgtttc
gacagactgcgtgagctgtttgagaaaatccacacgatctacaacaaggaaggctacggt
acaccgagctatatcaagacacagaaagccttgtctgaagagctgatgtcgatccgattt
accgccaaaaccattgaaaagctgtgcgacctggtgcgctctcaagtggacgatgtccgc
aaaaaagaacgcgaactgcgccggatcatcgttgacaaatgcggctacccgcaagaaaac
ttcatcgccgatttcagcgggcgcgacaagcacggcaacaaggtggccagccagttgtta
aatttgaagtggatcgaaaagcaggcggcctccggcaagcactggggtcccatcatggcc
cgcaacattccaccggtgcaggacctgcagcagaagttgaccgacctgcaatccaaagtc
gtggtgccgctggaccaactcaaggacatcaacaagcgcatgaacgaaggcgagtactca
tcgcgcgcggccaagaaggaaatgattgaagccaacttgcggctggtgatttccatcgcc
aaaaaatacaccaaccgcggcctgcagttcctggacttgatccaggaaggcaacattggc
ttgatgaaggcagtcgacaaatttgaataccgtcgcggctacaagttctcgacctacgcc
acctggtggattcgtcaggccatcacgcgctcgatcgctgaccaggcccgcaccatccgc
atcccggtgcacatgatcgaaaccatcaacaagatgaaccgtatcagccgtcagcacctg
caggaatttggctttgagcctgacgccagcgtgttggccgagcgcatggagatcccggaa
gacaagatccgcaaaatcatgaagatcgccaaggaaccgatctcgatggaaacacccatt
ggggacgatgacgattctcatttgggcgacttcattgaagacgccgccaataccgcaccg
atggaagcggccatgcaagccggtctgcgcgacgtggtgaaagacattctggacagtctg
acgccgcgcgaagccaaggtgttgcgcatgcgtttcggcatcgagatgaccagtgaccac
acgctggaagaagtcggcaagcaattcgacgtgacgcgcgagcgcatccgtcaaattgaa
gccaaagcactgcgcaagctcaagcacccttcgcgctcggacaagctgcgcagcttcact
gacaacctttag
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