Rhodoferax ferrireducens: Rfer_1720
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Entry
Rfer_1720 CDS
T00334
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rfer_1720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfr03019
]
Rfer_1720
03009 Ribosome biogenesis [BR:
rfr03009
]
Rfer_1720
Enzymes [BR:
rfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Rfer_1720
Messenger RNA biogenesis [BR:
rfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rfer_1720
Ribosome biogenesis [BR:
rfr03009
]
Prokaryotic type
rRNA processing factors
Rfer_1720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ABD69449
UniProt:
Q21XQ4
LinkDB
All DBs
Position
complement(1856782..1859805)
Genome browser
AA seq
1007 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGCEQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFQPGVAVGQARIQDAIREGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRADLKEALDQLEYPNGMSIIARTAGIGRSAPELQ
WDLNYLLKLWAAIDGAAKGAKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDVFDQAQ
QFMAHVMPEHADRVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIKGSDIEETATRTNLEAAEEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENR
LRDSLRQDRARVQFATISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQ
ILRIIQEESLKDNTASVLCQVPVEVASFLLNEKRAEIAKIELKQRINVLMVPNKTLETPN
YKLERLKHDDPRLDNIESSYKLADQMEDATAVTRRSQEPTNKQTPIIKGVLPDAPAPVAP
PRPEPVKPAVAARTAPRPVPASVAPVPPVEGGFFGWLKRLFAPEATPVVPAQPKADSAQA
DKREERPSREGARRGEPRSDGRDEGRGGRGGRGGRGDGRGDGRGDGRGDGRGDGRGGRTG
RGERPASGPRERFDGEGRPAAMDTGASQVQTSLNGTGQEASRTEPGQERPARNSERGGRG
GRGGRGRSERVDGVESTSPAEREELRPDLRNERRPERNRRPDANVANVPSDAFNQESNRT
DVLLAVSRENVADLEPGLAAQATERPEGTPTREKRSRDRYGRDRAPRGERPEQGERQDQP
SRDSQPSAEPSAQEPRKSYFTASPEAAATPAEPTPVAATPAAAPAAIPVAVSSAAPEPVA
TPVTVSMVAAPAAEPVAAAAAMPRLEQFELPLGELVQVAQSSGLSWVNSDPEKIAAVQAA
IAAEPKPVHVPRERPAVVKVEGGPLVLVETKRDLRNMTLPFEEKEPQ
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgattaacgccacgcaggctgaagaacgccgcctggccattgtcgac
ggacaaaaactcctcgactacgagattgaaatcgaaggttgcgaacaacgcaagggcaac
atctacaaggccgtcgtcacccgcgtcgagccgtcgctggaagcctgttttgtcgattac
ggtgaagaccgtcatggctttctgccattcaaggaaatttcccggcagtattttcaaccc
ggcgtggccgtcggccaggcacgcatccaggatgccatccgtgaaggccaggaactgctg
gtgcaagtggaaaaggaagagcgcggcaacaaaggcgctgccctgaccaccttcgtgtcg
ctcgctggccgctacgtggtgctgatgcccaataacccacgcggaggcggtgtctcacgc
cgcattgaaggcgaagaccgggccgacctgaaagaggccctcgatcagcttgaatacccc
aacgggatgagcatcattgcccgcaccgccggcattggccgcagtgcgcccgagttgcaa
tgggacctgaactacctgcttaaattgtgggccgccattgatggcgccgccaagggtgcc
aagggcgccttcctgatttaccaggaatcgtctttggtgatccgcgccattcgtgattac
ttcaacaacgacatcggcgacatcctgatcgacaccgacgacgtgtttgaccaggcccag
caattcatggcccacgtgatgcccgagcacgccgaccgcgtcaagcgctaccgcgatgat
gcaccgctgttcagccgtttccagatcgagcaccagatcgaatcggcctacgcccgcacc
gtgcaattgcccagcggcggcgccattgtgattgaccacaccgaagcgctggtgtcggtg
gacgtcaactcggcacgcgccatcaaaggcagcgacatcgaagaaactgccacccgcacc
aatttggaagcggctgaagaagtggcacgccagatgcgcctgcgggacttgggtggcctg
atcgtgatcgactttatcgacatggaagaaagccgcaaccgccgcgacgtggaaaaccgc
ctgcgtgactcgctgcggcaagaccgcgcccgtgtgcagtttgccaccatcagcaaattt
ggtctgatggagatgagccgccagcggctgcgccccgccttgtcagagggcgcctccatt
ccctgcccgcgttgcggcggctccggccacatccgtgacacggaatccagtgcattgcag
atcttgcgcatcatccaggaagagtctctgaaagacaacacggcttcggtgctgtgccag
gtcccggttgaggttgcctccttcttgcttaatgaaaaacgggccgagattgcaaaaatt
gaactcaagcaacgcatcaacgtcctgatggtgcccaacaagacactggaaacccccaac
tacaagctggagcgtctcaagcatgacgacccgcgcctggacaacatcgaatccagctac
aagttggccgatcagatggaagacgccacggcggtgacacgccgctcgcaggaacccacc
aacaagcagacgccgatcatcaaaggcgttttgcccgatgccccggcgcctgttgcaccg
ccccggcccgagcccgtcaagccagcggtcgccgcgcgcacggcacccaggcccgtacct
gcatccgtggccccagtgccaccggtagaaggtggtttctttggctggctcaagcggctg
tttgcgcccgaagcaacgcctgttgtccccgcgcaacccaaggcagactcggcccaggcc
gacaagcgcgaagaacgcccgagccgcgaaggcgcccgtcgtggcgaaccccgaagcgac
ggtcgcgacgaaggtcgtggcggcagaggtggccgcggcggacgtggtgacggacgtggt
gacggacgtggtgacggacgtggtgacggacgtggtgacggacgtggcggcagaaccggt
cgcggtgagcgtccagcgtctggcccgcgtgagcgtttcgacggcgaaggcagacccgcc
gcgatggatacgggcgccagccaagtgcagacgtcactcaacgggacaggccaggaagca
tcccggacggaaccagggcaagagcgcccagcgcgcaattcggaacggggtggccgtggc
ggccgcggtggtcgcggccgcagcgagcgagtcgacggcgtcgagtcaaccagtcccgct
gaacgcgaagagctccggcccgacctgcgcaacgagcgtcgtcccgaacgcaaccgtcgg
cctgacgccaacgttgctaacgtccccagcgacgcgttcaaccaagagtccaaccgcacc
gatgtcttattagccgtctcgcgcgagaatgttgccgacctcgaaccaggccttgccgct
caggcgacggagcgtcccgagggcacgccaacgcgtgaaaagcgcagccgtgaccgctat
ggccgggatcgtgcacctcgcggtgagcgccccgaacaaggggagcgtcaggaccagcca
tcgcgcgacagccagccttcagcagaaccgtcggcgcaagagccccgcaagtcctacttt
acggccagccctgaagcagccgcgaccccggcggaaccgaccccggttgcggcaacgcca
gccgcagcgccggcagcaatccctgtcgctgtgtcatctgccgcgccggagcccgtggca
acaccggtcaccgtgtccatggtcgcggccccagcggctgagcctgtggcagcggcagca
gccatgcccaggcttgagcagtttgagttgccactgggcgagttggtccaggtggcccag
agctccggcctgagctgggtcaactcagaccctgaaaagattgcagcggtccaggcggcc
atcgcggccgaaccaaaaccagttcacgtgccccgtgaacgccctgcagtggtaaaagtt
gagggtggaccactggttttagtggaaaccaaacgcgatttgcgtaacatgacgctgccc
tttgaagaaaaggaacctcagtaa
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