Rhodoferax ferrireducens: Rfer_2006
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Entry
Rfer_2006 CDS
T00334
Name
(GenBank) carbamoyl-phosphate synthase large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr00220
Arginine biosynthesis
rfr00240
Pyrimidine metabolism
rfr00250
Alanine, aspartate and glutamate metabolism
rfr01100
Metabolic pathways
rfr01110
Biosynthesis of secondary metabolites
rfr01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
Rfer_2006
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
Rfer_2006
00220 Arginine biosynthesis
Rfer_2006
Enzymes [BR:
rfr01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
Rfer_2006
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
ATP-grasp
ATPgrasp_Ter
Dala_Dala_lig_C
ATP-grasp_4
ATP-grasp_3
ATP-grasp_5
TIMELESS_C
Motif
Other DBs
NCBI-ProteinID:
ABD69731
UniProt:
Q21WX2
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Position
2161639..2164935
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AA seq
1098 aa
AA seq
DB search
MPKRTDIKSILIIGAGPIIIGQACEFDYSGVQACKALREEGFKVILINSNPATIMTDPAT
ADVTYIEPITWQTVEKIIAKERPDAILPTMGGQTALNCALDLWHHGVLEKYNVELIGAKP
EAIDKAEDRLKFKDAMTKIGLGSARSGIAHSMEEAWGVQKTVGFPTVIRPSFTLGGTGGG
IAYNSEEFEVICKRGLEASPTNELLIEESLLGWKEYEMEVVRDQADNCIIICSIENLDPM
GVHTGDSITVAPAQTLSDKEYQILRNASLAVLREIGVDTGGSNVQFSINPEDGRMVVIEM
NPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELRNDITGGATPASFEPSIDYVVTKIP
RFAFEKFPAADSRLTTQMKSVGEVMAMGRTFQESFQKALRGLEVGVDGMNEKTQDREVLE
KELGEPGPERIWYVGDAFAAGWSVDEVFELTKIDRWFLVQIEQIVKIELEIERLPAPEQG
SALDAMDGATLRALKQKGFSDRRLAKQFKTTDTAVREKRHALGVRPVYKRVDTCAAEFAT
NTAYLYSTYESSSPFDTGSECEADPTDRKKIMVLGGGPNRIGQGIEFDYCCVHAALAMRE
DGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPYGVIVQYGGQTPLKLA
LALEANGVPIIGTSPDMIDAAEDRERFQKLLHQLGLRQPANATARTEPEALEKAAALGYP
LVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIECDVDCVRDAQ
GQTFIGGVMEHIEQAGVHSGDSACSLPPYSLCAETVTEIRRQTAAMAEALNVVGLMNVQF
AIQTLEGADVIFVLEVNPRASRTVPFVSKATGVQLAKVAARCMVGQSLASQGIGTEVTPP
YFSVKEAVFPFVKFPGVDTILGPEMKSTGEVMGVGKTFGEAFVKSQIGAGTKLPRPRTPS
GEPAGKVFISVKNNDKPRVIEVARDLVELGFTLLATKGTALAINAAGVSCATVNKVTEGR
PNIVDMIKNQEIALVINTVEERRNAIADSRHIRTSALFGRVTTFTTIAGAEAAVQGMRYM
DDLSVISIQEMHAQLAGA
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacgtaccgacatcaaaagcatcctcatcattggcgccggcccgatcatcatc
ggccaggcttgcgagtttgactactctggtgtgcaggcctgcaaggcgttgcgcgaagaa
ggcttcaaagtcattctgatcaacagcaacccggccaccatcatgaccgacccggccacg
gcggacgtcacctacatcgagccgatcacctggcagacggttgaaaaaatcatcgccaag
gagcgtcccgatgcgatcctgccgaccatgggcggtcagaccgcgctgaactgtgcgctc
gacctgtggcaccacggcgtgctggaaaagtacaacgtcgaattgattggcgccaagccc
gaggccatcgacaaggccgaagatcgcctgaagttcaaggacgccatgaccaaaattggt
ctgggttcggcccgctccggcattgcccacagcatggaagaagcctggggcgtgcaaaag
acggtgggtttcccgaccgtgatccggcccagtttcacgctgggcggcactggtggcggc
attgcctacaactcggaagaattcgaagtcatctgcaagcgcggtctggaggcgtcgccg
accaatgagctgctgattgaagaatcgctgctcggctggaaagagtacgagatggaggtg
gtgcgcgaccaggctgacaactgcatcatcatttgttccattgaaaacctggatccgatg
ggtgtgcacacgggcgactcgatcacggtcgcgccggcgcagacgctgagcgacaaggag
taccagattctgcgcaacgccagtctggccgtgctgcgcgaaatcggcgtcgataccggt
ggctccaacgtgcagttttccatcaaccccgaagatgggcgcatggtggtgatcgagatg
aatccgcgcgtcagccgctcctcggcgctggcttccaaggctactggttttccgattgcc
aagatcgccgccaaactcgcagtcggttacacgctggacgaattgcgcaatgacatcacg
ggcggggccacacccgccagctttgagccgagcattgactacgtggtgacgaagattccg
cgtttcgcgttcgaaaaattcccggcggccgacagccgcctgacgacgcagatgaaatcg
gtcggtgaagtgatggcgatggggcgcacctttcaggagtcgttccagaaagccctgcgt
ggcctcgaagttggcgtcgatggcatgaatgagaaaacgcaggaccgtgaagtactggaa
aaagagttgggcgagcccggccccgagcgtatctggtacgtgggcgacgcgtttgccgcc
ggctggagcgtggacgaggtgtttgagctgaccaaaattgaccgttggtttctggtgcag
attgagcagatcgtcaagattgagctggagattgagcgcttgcccgcgccggaacagggc
tccgcgctggatgcgatggacggcgcgaccttgcgcgctttgaagcaaaaaggattttcc
gatcggcgcctggccaagcagttcaagaccaccgacacggctgtgcgtgagaagcgccac
gccctgggtgtgcgcccggtctataagcgtgttgacacctgcgcggccgagttcgccacc
aacacggcgtatctgtactcgacctatgagtcgtccagcccgttcgacaccggtagcgag
tgcgaggccgatcccacggaccggaaaaaaatcatggtgctcggcggtggcccgaaccgc
attggccagggcattgagtttgactactgctgtgtgcatgcggcgctggcgatgcgcgag
gacggctatgagaccatcatggtcaactgcaaccccgagactgtgtcgaccgactacgac
acctcggatcgtctctatttcgagccggtcacgctggaagacgtgcttgaaattgtggac
aaggaaaagccctatggcgtgatcgtgcagtacgggggccagacaccactcaaactggcg
ttggcgctggaagccaacggcgtgcccatcatcggcacctcgcctgacatgattgacgcc
gccgaagaccgtgagcgctttcagaagttgctgcatcaactcgggcttcgtcaacctgcc
aacgcgactgcccgcaccgagcccgaggcgcttgaaaaagcggccgcgctgggctacccg
ctggtggtgcgaccgagctatgtgctgggtggccgggccatggaaattgtgcatgagcag
cgcgacctggagcgctacatgcgcgaggcggtcaaggtcagccacgattcgccggtgctg
ctggaccgtttcttgaatgacgccattgagtgcgatgtggactgtgtgcgcgacgcgcag
gggcagaccttcatcggcggcgtcatggaacacattgaacaggcgggcgtgcacagtggc
gactcggcctgctcgctgccgccctacagcttgtgtgccgaaacagtgacagagatcagg
cggcaaacggcggccatggccgaggccttgaacgtggtcggcttgatgaacgtgcagttc
gccattcagaccctggagggcgctgacgttatttttgtgctggaagtcaatccaagagcg
tcccgcaccgtgccctttgtgtccaaagccaccggtgttcagttggccaaggtggcggcc
cgctgcatggtcggtcagtcgctcgcctctcagggcatcgggacggaagtgacgccaccc
tatttcagcgtgaaagaagcggtgttcccctttgtcaaatttcccggcgttgataccatt
cttggccccgagatgaagtccactggcgaggtgatgggcgtgggcaagacttttggcgag
gcctttgtgaagtctcaaatcggggccggcaccaaattgccacggccgcgcaccccctcg
ggcgagcctgcgggcaaggtgttcatctcggtcaaaaacaacgacaaaccccgtgtcatt
gaggtcgcgcgtgatctggtggaactggggttcacgctgctggcaaccaagggaacggcc
ttggccatcaacgcggccggtgtgagctgtgccacggttaacaaggtgaccgaagggcgc
cccaacattgtggacatgatcaagaaccaggaaattgcgctggtcatcaatacagtggaa
gagcggcgcaatgcgatcgcggactcgcgtcatattcgcacctcggctttgttcgggcgg
gtaaccaccttcacgaccattgccggcgccgaggcggccgtgcagggaatgcgctacatg
gacgacctgagtgttatttcgatccaggaaatgcatgcccagttggcgggtgcttga
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