Rhodoferax ferrireducens: Rfer_2040
Help
Entry
Rfer_2040 CDS
T00334
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03030
DNA replication
rfr03430
Mismatch repair
rfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rfer_2040
03430 Mismatch repair
Rfer_2040
03440 Homologous recombination
Rfer_2040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rfr03032
]
Rfer_2040
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_2040
Enzymes [BR:
rfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rfer_2040
DNA replication proteins [BR:
rfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Rfer_2040
DNA repair and recombination proteins [BR:
rfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Rfer_2040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
RMI2
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ABD69765
UniProt:
Q21WT8
LinkDB
All DBs
Position
2204468..2208025
Genome browser
AA seq
1185 aa
AA seq
DB search
MFIHLRLHTEFSVVDGTNRIGDSVKAAAADGQPALAITDLSNLFGAIKFYKAARKCGVKP
LIGAEIWLEGLGQDASALSRLLLLVQNKQGYLNLSELLARAWTQQGNKAQASVKLDWLKE
LGEGLIVLSGAQAGPVGQALLQGDVARALDAALQLAGVFTHRFYLELQRAGRPDDEAHVV
ATVQLAARAGLPVVATHPIQFAGPDDFEAHEARVCIADGEILSNPRRVRRFTREQYFKSS
AQMQALFADVPSALANTLEIARRCNLTLVLDKPQLPDFPTPEVNGQRMTPDDYFRYASHE
GLKERMAHLYPDAAQRGQEMPRYLARLEFELNTIVKMGFPGYFLIVGDFINWAKNNGCPV
GPGRGSGAGSLVAYSLKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQTNRNLVIDYV
KSKYGKDAVSQIVTFGTMAARAAVRDVGRVLDMSYTFCDGISKLIPNKPGVSVSLQLPPP
DRKKDDKTVYAVEAEPLLAEREAKEEDVKTLLELARKLEGLTRNVGMHAGGVLIAPGKLT
DFCPLYQQPGSDSAVSQFDKYDVEAIGLVKFDFLGLATLTILEIARDFIIERHRGQENFA
FENLPLDDMRVYKLFQEGKTEAVFQFESRGMQGMLKDAKPTRLEDLIALNALYRPGPMDL
IPSFVARKHGREVVEYPHPLVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADMLRRAM
GKKDADEMARQRQIFRDGAAKNNINQAKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTA
WLKVHYTAEFFCANMTVEMDDTDKLKVLYEDALKMGLTFEPPDVNRGGSRFEPISDKVIR
YGLSAIKGSGQQAIEAIVAAREGRGVGPSGDVAGPFKSLFDFCVRVDRSRVNKRTVEALI
KAGAFDAIQLNRASLLASTDLAFEFGAAALANANQGGLFDMDDDAQGSSTQEPELVQAVP
WGVKERLTFEKTAVGFYLSGHLFDEVALEVRRFAKRQIDDLIDIREPQLLAGIITDFRVI
NGQRGKLALFKLDDKSGVIEARADEALINAHKNLLKDDELVIVMGQLKPDRFSGGMQLTV
TQIWDLEQARCRFGKFLRLVVSTQPGQAPDIARMARDYPPLREVTEQGELLRGLGVRLSV
TCQGEGVRAAAELQLGERAKFYPSNAALAGWRVQAGAGKSDIVYE
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgtttatccaccttcgtttgcacactgaattttccgtcgttgacggcaccaaccgtatt
ggcgacagcgtcaaggccgcggccgctgatggccagccggctttggccattaccgacctg
agcaatctgtttggcgccatcaagttttacaaggcggcgcgcaagtgcggcgtcaagccg
ctgattggcgccgaaatctggctcgaagggctgggccaggatgccagcgcgctgtcgcgg
ctgctgctgctggtgcaaaacaagcagggttacctcaatttgtcggagttgctggcgcgc
gcctggacgcagcagggcaacaaggcgcaggccagcgtcaagctggactggctgaaagag
ctgggcgagggcttgatcgtcttgtccggcgcccaggccgggccggtggggcaggcgctg
ctgcagggcgatgtggcgcgcgcgctggacgctgcactgcagttggcgggcgtatttacc
catcggttttacctggagttgcagcgcgccggtcgccccgacgatgaggcgcatgtcgtg
gccacggtgcaattggccgcgcgcgctggtttgccggtggtggcgacgcacccgattcag
tttgccgggccggatgattttgaagcgcatgaggcgcgcgtgtgtattgccgacggtgaa
attttgagcaacccacgccgggtgcgccgcttcacgcgcgagcagtatttcaagtccagc
gcgcagatgcaggcgctgtttgccgacgtgccttcggcactcgccaacacgctggagatt
gccaggcgttgcaacctgaccctggtgctggacaaaccgcagctgcctgactttccgacg
cccgaggtcaacggccagcgcatgacgccggatgattactttcgctatgcctcgcacgag
ggcctgaaagagcgcatggcccatctgtacccggatgcggcgcagcgcggccaagagatg
ccgcgctacctggcacggcttgaatttgagctcaataccatcgtgaagatgggttttccg
ggctattttttgattgtgggcgacttcatcaactgggccaaaaacaacggttgcccggtc
gggccgggacggggctccggcgcggggtcgctggtggcctactcgctcaaaatcaccgac
ctggaccccttgcgctacaacctgctgtttgagcgctttttgaacccggaacgggtttcg
atgcccgactttgacatcgacttttgtcagaccaaccgcaacctggtgattgactacgtc
aagagcaaatacggcaaggacgccgtcagccagatcgtcactttcggcaccatggccgcg
cgcgctgcggtgcgcgacgtgggacgtgtgctggacatgagctacaccttttgcgatggc
atcagcaagctgatcccgaacaagccgggcgtcagcgtgagcctgcagttgccgccaccg
gatcgaaagaaagacgacaaaaccgtctatgccgtcgaggccgagccgctgctggctgag
cgcgaggccaaggaagaagacgtcaagaccctgctggaactggcgcgcaagttagagggc
ttgacgcgcaacgtcggcatgcacgccggcggtgtgctgatcgcaccgggcaagctgacc
gacttttgtccgctttatcagcagcccggtagtgactcggcggtgagtcagtttgacaaa
tacgacgtggaagccattggcctggtcaagttcgactttttgggcctggccacactcacc
attctggagattgcgcgcgacttcatcatcgagcgtcaccggggccaggaaaactttgcc
tttgagaacctgccgctggacgacatgcgggtctacaagctgtttcaggagggcaagacc
gaggccgtgttccagtttgaatcgcgcggcatgcagggcatgttgaaagacgccaagccg
acccgcctggaagacctgattgcgctcaacgccctgtaccggcccggcccgatggacctg
atccccagctttgtggcgcgcaagcatggccgcgaggtggtcgagtacccgcacccgctg
gtggccgagatgctgagcgagacctacggcatcatggtctaccaggagcaggtgatgcag
acggcacagattctgggcggctattcgctcggtggcgctgacatgctgcgccgcgccatg
ggcaagaaagacgccgatgaaatggcccgccagcgccagatcttccgcgacggtgcggcc
aaaaacaacatcaatcaagccaaggccgacgaggtatttgacttgatggaaaaatttgcc
ggctatggcttcaacaagtcgcacgcggccgcctattcactgttggcctaccacacggca
tggctcaaggtgcactacacggccgagttcttttgcgccaacatgacggtggaaatggac
gacaccgacaagctcaaggtcttgtacgaagacgctttgaaaatgggcttgacgtttgag
ccgcccgatgtgaaccggggtggcagccgctttgagccgatctccgacaaggtcattcgc
tatggcctgagcgccatcaagggcagtggccagcaagcgattgaggcgattgtggcggcg
cgcgaaggccgtggtgtcgggccctcgggcgatgtggcggggccgttcaaaagtctgttc
gatttttgcgtgcgggtggaccgttcgcgcgtcaacaagcgcacggtcgaggcgctgatc
aaggccggtgcgtttgatgccatccagctcaaccgcgccagcctgctggcctcgaccgac
ctggcgttcgagtttggcgccgccgcactggccaacgccaaccagggcggtttgttcgac
atggacgatgacgcgcaagggtcgagcacgcaagagccggagctggtgcaggctgtgccg
tggggtgtgaaagagcgcctgacgttcgagaaaaccgccgtcggcttttatttgtcgggc
catctgtttgacgaggtggctttggaagtgcgccgctttgccaagcgtcagatcgacgac
ctgattgacatccgcgagccgcagttgctggccggcatcatcactgattttcgggtcatc
aacggccagcgcggcaagctggcgctgttcaagctcgacgataaatcgggtgtgatcgag
gcacgagccgatgaagcgctgatcaacgcgcacaagaatttgctcaaggacgacgaactg
gtgatcgtcatgggccagttgaaaccggaccgtttttcaggcggtatgcagctcacggtg
acgcagatttgggatttggagcaggcgcgctgccgctttggcaagtttttgcggctggtg
gtgagcacgcagcccggccaggcgcccgatatcgcccgcatggcccgggactacccgccg
ctgcgcgaagtcaccgagcagggcgagctgctgcgcggcctgggcgtgcggctgtcggtg
acctgccagggggagggcgttcgggctgcggcggagttgcaactgggggaacgtgccaag
ttttaccccagcaacgcggcgctggcgggctggcgggtgcaggcgggggcggggaagtct
gacattgtttatgagtga
DBGET
integrated database retrieval system
