Rhodoferax ferrireducens: Rfer_2106
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Entry
Rfer_2106 CDS
T00334
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rfr
Rhodoferax ferrireducens
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfr03019
]
Rfer_2106
Enzymes [BR:
rfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Rfer_2106
Messenger RNA biogenesis [BR:
rfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Rfer_2106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
AAA_22
HA2_N
nSTAND3
AAA_19
NACHT
T2SSE
AAA_23
SRP54
AAA_30
AAA_25
PhoH
Motif
Other DBs
NCBI-ProteinID:
ABD69830
UniProt:
Q21WM3
LinkDB
All DBs
Position
2279307..2283203
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AA seq
1298 aa
AA seq
DB search
MPLQIEFPESLPVSGKRDEIMAALEQHQVIIVCGETGSGKTTQLPKIALAMGRGKLNYPP
GRGKLIGHTQPRRIAASSVAKRIAEELKTTLGDVVGFKVRFQDRLSRDTSVKLMTDGILL
AETQTDPLLKAYDTIIIDEAHERSLNIDFLLGYLRQILPRRPDLKIVVTSATIDAQRFAD
HFASRNGPAPVIMVSGRMFPVEQRYRPFEESRDYDLNSAIADAVDELWRDVHNSGDILVF
LPGEREIREAADHLRGHLSHQPVFRNAEVLPLFARLSQAEQDRIFDGHTGRRIILATNVA
ETSLTVPGIRYVIDAGTARMKRYSFRSKVEQLLVEPISQSSANQRAGRCGRVANGICIRL
YDEKDFNGRPRFTDPEILRSSLAGVILRMKSLRMGLVEEFPFIERPSGRAIADGYQLLNE
LGAVDDANELTTMGQELAKLPLDPRVGRMILEARERGALDEVLVIASALSVQDVRDRPME
AQQQADQAHAKFDDEKSEFSGYLRLWKWINDGKGGEGQHKLSNRQYEQLLRQNFVNIRRV
REWRDIHSQLHTVVAEHKWRLNTLPANYEQLHLSMLSGLLGNIGCKLETEGDKPGGGGEY
LGARGIKFYPHPGAHLVKKPGRWIVAAELVETTRLFGRGIAAIEPQWLEQVGGHLLKKQL
LDPHWEKKVAEVTALERATLYGIVIYSGRRVNFGRVDMVAAREIFIRQALVDGQWETKLP
FLESNQKLIKQVEDLEHKARRQDVLVDEELIFAFYDQQLPADVCSGHSFENWYREEIKKN
PKLLLLTREELMRHEAAGITTQSFPKTIRLGGVDCAAAYLHEPGDAKDGLTVTVPLFVLN
QVNEERCEWLVPGMLKDKIQALIKTLHQRPRSRLVPLPDTASKMAETLNAPEVFGHGSLL
DAVMKLVRLATSIDIVRADIKVDMLSPHFFMNFRVVDEHGRQLGTGRNLGALKAELGAKA
RGAFQALAGLKMAKDAAALPVFKENKPIARVHSTKEAIKNIVTPVAPAGQRHTAWTFGEL
PELLEIQKGGQTLIGYPALIDAGDAVMIEVFDEPDVAAAKHRAGLRRLFSLAVKDALKYL
EKNIPDLQKMAVTFMQVGKGADGSGGGTIEELREQILAVALDRAFLLDPLPTDEFAFKRR
VEEGRGRLTLIANEVARLAATILLEYSVAARKIKDTKNAPEATADAAQQLARLMPKRFLI
LSPWGPLQHFARYQKAITARLEKYRADPARDAARLAELRPLEQRYWRLVAERKGVLDERL
QEFRWLLEELRVSFFAQELRTPQPVSVKRLEKAWGQLQ
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
ttgcccctccaaatcgagtttccagaatccctgcccgtgtcgggtaaacgcgacgagatc
atggccgcgctggagcagcatcaggtcatcatcgtgtgcggagagaccggctcgggcaaa
acgacccagttgcccaagatcgccctggccatggggcgcggcaagctgaactaccctccc
ggtagaggtaaattgatcggccacacccagccgcgccgcattgccgccagcagtgtcgcc
aagcgcattgccgaggagctgaaaacgacgctcggcgatgtggtgggcttcaaggtgcgg
tttcaggaccggctcagccgcgatacctcggtcaagctgatgaccgatggcatcttgctg
gccgaaacacaaaccgacccgctgctcaaagcctacgacaccatcatcatcgacgaggcg
cacgagcgttctctcaacattgattttctgctgggctacctgcgccagatcctgccgcgt
cgtcccgacctgaagattgtggtgacctcggccaccatcgacgcgcaacgttttgctgat
cactttgccagtagaaatggtccagcgccggtcatcatggtgtcgggccgcatgttcccg
gtggagcagcgttaccggccgttcgaagaatcacgcgactacgacctcaatagtgcgatt
gccgatgcggttgatgagttgtggcgcgacgtgcacaacagtggcgacattctggtgttc
ctgcccggcgagcgcgaaatccgcgaggcggcggatcacctgcgcggccacctgagccac
cagcctgtgtttcgcaacgccgaggtgctgccgctgtttgcgcgcctgtcgcaggccgaa
caggaccgcattttcgacggccataccgggcggcgcatcattctggccaccaacgtggct
gaaacctcgctcaccgtgccgggcatccgctacgtgattgacgccggcacggcgcgcatg
aagcgctacagtttcagaagcaaagtggagcagttgctggtggagccgatcagccagagt
tctgccaaccagcgtgccgggcgctgcggccgggtcgccaatggcatttgcatccggctc
tatgacgagaaagacttcaatggtcggccgcgctttaccgacccggaaatcctgcgctca
tcactggcgggggtgattctgcgcatgaagtcgctgcgcatgggtttggtggaagagttc
cccttcatcgagcgcccgtcgggccgtgccattgccgacggctaccagttgctcaatgaa
ctcggcgccgtcgatgatgccaatgagttgaccaccatgggccaggagctggccaaattg
ccgctggacccgcgcgtcggccgcatgattctggaagcacgggagcgcggtgccttggat
gaagtgctcgtgattgcctcggcgctcagcgtgcaggacgtgcgcgaccgcccgatggaa
gcgcagcagcaggcggatcaggcacacgccaagttcgacgacgaaaagagcgagttcagc
ggttatctgaggctgtggaaatggattaatgacggcaagggcggggaggggcagcacaag
ttgtccaaccgccaatacgagcagttgctgcgacaaaacttcgtcaacatccgccgcgtg
cgcgagtggcgcgacattcattcgcaactgcacacggtggtggccgagcacaaatggcgc
ctcaacacgctgcccgccaattacgaacaactgcacctgtcgatgctgtccggcctgctg
ggcaacatcggctgcaagctggaaactgaaggcgataaaccgggaggagggggcgagtac
ctgggtgcacgcggcatcaagttttatccgcatccgggcgcacatctggtcaagaaacca
ggccgctggatcgtggccgccgagctggtggaaaccacgcgcctgtttggccgcggcatt
gcggccattgagccgcaatggctggagcaggtgggcggccatttgctcaagaaacaactg
cttgatccgcactgggaaaagaaggtggccgaggtcacggcgctggaacgcgccacgctc
tacggcatcgtcatctacagcgggcgccgggtcaacttcggccgggtagatatggtcgcg
gcgcgcgagatattcatccgccaggctctggtggatgggcagtgggaaaccaagctgccg
tttctggaatccaaccagaagctcatcaaacaggtggaagacttggagcacaaggcgcgc
cggcaagacgtgctggtggacgaagagctgatttttgccttctacgaccagcaattgccg
gccgatgtgtgcagcggccacagcttcgagaactggtaccgcgaggagatcaagaaaaac
ccgaagctcctgctgctgacgcgcgaagagctgatgcgccatgaggccgccggcatcacc
acccagtccttccccaaaaccatccgtctgggtggcgtggactgcgctgctgcttatctg
cacgaaccgggcgacgccaaggacggcctgaccgtgacggtgccgctgtttgtgctgaac
caggttaacgaagagcgttgcgagtggctggtgcccggtatgctgaaagacaaaattcag
gcactcatcaaaaccctgcatcagcgtccgcgctcgcgcctggtgccgctgcccgacacg
gccagcaaaatggccgaaacgctgaacgcccccgaggtctttggtcacggctctttgctg
gatgcggtgatgaaactggtgcgcctggcgacctcgatcgatattgttcgcgccgacatc
aaggtcgacatgctcagcccgcacttcttcatgaacttccgggtggtggacgaacatggc
cgccagctcggcaccgggcgcaacctgggtgcgctcaaggccgaactcggtgccaaggcg
cgtggtgcgttccaggccttggccggcctcaaaatggccaaggacgccgccgcactccca
gtctttaaggaaaataagcctatagcccgcgtccacagtacaaaggaagctattaaaaat
atagtaacaccggtcgcccccgcaggtcagcgccacaccgcctggacttttggcgagttg
cccgaactgcttgaaatccaaaaagggggccagaccctgatcggctacccggcgctgatc
gatgccggtgacgccgtcatgatcgaggtgtttgacgagcccgacgtggctgccgccaaa
caccgcgctggcctgcgccgcctgttttcgctggcggtcaaggacgcactcaagtacctg
gaaaagaacattcccgatctgcagaaaatggcagtcacctttatgcaggtgggcaagggc
gccgacggcagcggtggcggcaccattgaagaactgcgtgaacagatcctcgccgtggcg
ttggaccgggcctttctgctcgatccattacccactgacgagtttgcgttcaagcggcgg
gtggaagaggggcggggacgcctgaccctgatcgccaatgaagtggcacgcctggccgcc
accattctgctggagtactcagtagcagcccgcaagatcaaggacaccaagaatgcgccg
gaggccaccgcggacgccgcccaacaactggcccgcttgatgcccaagcgctttctcatc
ctgtcgccgtggggcccgctgcagcactttgcccgctaccagaaagccatcaccgcgcgg
ctggaaaaataccgcgccgacccggcccgcgatgccgcccgcctggcggagctgcgcccg
ctggaacagcgctactggcgcctggtggccgagcgcaaaggcgtgcttgatgagcgcctg
caagaattcagatggctgctcgaagaactgcgcgtcagcttcttcgcgcaggaactacgc
acgccgcaaccggtgagtgtgaaacgcctggaaaaggcttggggacaattgcaatga
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