Rhodoferax ferrireducens: Rfer_2169
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Entry
Rfer_2169 CDS
T00334
Name
(GenBank) DEAD/DEAH box helicase-like
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rfer_2169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfr03019
]
Rfer_2169
Enzymes [BR:
rfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rfer_2169
Messenger RNA biogenesis [BR:
rfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rfer_2169
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABD69893
UniProt:
Q21WG0
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All DBs
Position
complement(2364147..2365871)
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AA seq
574 aa
AA seq
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MKFEELNLAPAIIKAVLEQGYETPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFVLPML
HKLSQSEAARNKFGGIGIRALVLTPTRELAAQVEESVQTYGKYVELTSTVIFGGVGMNPQ
ISRVKKGVDILVATPGRLLDLLQQGVLDLSQVQILVLDEADRMLDMGFIHDVKKVLAVVP
KDKQSLLFSATFSEEIRELAATLLKSPLTIQVTPRNTTVQRITQLIHPVGRGKKKALLAH
IVQERNWSQVLVFTRTKFGANNVAEFLTKSGINAMALHGNKSQAARTQALAGFKSGDIRA
LVATDIAARGIDIDDLPHVVNYDIPNVCEDYVHRIGRTGRAGADGAAVNLVCLDEEGFMQ
AIERFTKQDIEVQIVEGFMPEPGEQAEPIAMGRQTIWGGAGKPPSRDVMQAAARTARTEM
LQRVRENKGPQGERGGRAGAGRGGNGGGQRSAAPRSHASAGEQAARGPGQRPAQGRAGNA
GGYPGGNGGGNSGAYGGGNSAPSRSPSSQPDPMRTSVDMMAERGARRGGGGFGGGNRTGG
SYAGSGGRSGGAGGFGGGGNGSRGPGSSRGSFNR
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagaactaaatttggctccggccattatcaaagccgtgcttgagcagggc
tacgagacccccaccccgattcaagcgcaagccattccggccgtgctcgacggccacgac
ctgcttggcggcgcccaaaccggtaccggtaaaacagccgcgtttgtactgcccatgctg
cacaagctgagccagagtgaagcggcccgcaacaaattcggcggcattggcattcgcgcc
ctggtgctgacacccacccgtgaactcgccgcccaagtcgaagaatcggtgcagacctac
ggcaaatacgtggaactgacgtcgaccgtgattttcggcggcgtcggcatgaacccgcag
atcagccgcgtcaaaaaaggcgtcgacattctggtggccaccccgggtcgcctgctggac
ctgctgcaacaaggcgtgctggatttgagtcaggtgcaaatcctggtactcgacgaggcc
gaccgtatgctcgacatgggctttatccatgacgtcaaaaaagtgctggccgtggtcccc
aaagacaaacagagcctgctgttctcggccaccttcagtgaagaaattcgtgagctcgcc
gccacactgctcaaaagcccactcaccatccaggtcacgccgcgcaacacgaccgtgcag
cgcatcacgcagctgattcacccggtcggtcgcggcaaaaagaaagcgctactggcgcac
atcgttcaagagcgtaactggagccaggtgctggtgttcacccgcaccaaatttggcgcc
aacaacgtcgccgaattcctgaccaaaagcggcatcaatgccatggccctgcacggcaac
aaaagccaggcggcgcgcacccaggcgctggccggcttcaagagcggcgacattcgggcc
ctggtggcgactgacattgccgcccgcggcattgacattgacgacctgccgcatgtggtg
aactacgacatccccaacgtttgcgaagactatgtgcaccgcattggccgcaccgggcgt
gcgggcgctgacggtgctgccgtcaacctggtgtgcctggacgaagaaggcttcatgcag
gcgattgagcgctttaccaagcaggacattgaagtccagatcgtagaaggcttcatgccg
gagcccggcgaacaggctgaaccgatcgccatgggtcgccagaccatttggggtggcgca
ggcaagccgcccagccgcgatgtcatgcaggcagcggccagaacggcacgcaccgagatg
ctgcaacgggtgcgcgagaacaagggcccgcagggtgagcgcggtggccgcgccggtgcg
ggtcggggtggcaacggcggcggacagcgctcggcggcaccacgcagccacgcctcggcg
ggcgaacaggccgcacgtggccccggccaacgccccgcacaagggcgcgctggcaatgcg
ggtgggtatccaggtggcaatggcggtggcaatagtggtgcttacggcggcggcaactcg
gcaccctcgcggtcgccgtcgagccagcccgaccccatgcgtaccagcgtcgacatgatg
gctgaacgtggtgcccgccgtggtggcggtggtttcggtggcggcaaccgtacgggaggt
tcttatgcgggatcaggtgggcgctccggcggcgcgggtggctttggtggcgggggcaac
gggtctcgtgggccgggcagttctcgcggctcttttaaccgataa
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