Rhodoferax ferrireducens: Rfer_2175
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Entry
Rfer_2175 CDS
T00334
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rfer_2175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_2175
DNA repair and recombination proteins [BR:
rfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rfer_2175
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rfer_2175
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_16
Kinesin
AAA_22
UB2H
Microtub_bd
AAA_25
FlaG
Motif
Other DBs
NCBI-ProteinID:
ABD69899
UniProt:
Q21WF4
LinkDB
All DBs
Position
2373430..2375562
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AA seq
710 aa
AA seq
DB search
MTVPTPAALVTSSDAEPVRSGTFVRYPDSPFELYQPYPPAGDQPEAINQLVEGVNDGEVF
QILLGVTGSGKTFTMANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPKNAVEYFVSYYD
YYQPEAYVPQRDLFIEKDSAINEHIEQMRLSCTKSVLERRDVVIVATVSAIYGIGQPEAY
HKMVMTLRVGDKLGQRDMIAQLVRMQYQRNDVDFSRGAFRVRGDTIDIFPAEHSEMAIRV
ELFDDEIESLQLFDPLTGRIRQKIPRFTVYPSSHYVTPREQVLSAVEAIKIELAERIKEF
VGQGKLVEAQRIEQRTRFDLEMLSEVGHCKGIENYSRHLSGAAPGEPPATLTDYLPKDAL
MFLDESHVLIGQFGAMYNGDRSRKTTLVEYGFRLPSALDNRPLKFEEFETRMRQAIFVSA
TPAQWEKDHAGKIVEQLVRPTGLVDPEVEVRPAVNQVDDVLQEIRIRVEKHERVLITTLT
KRMAEQLTDYLSDNGVKVRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEV
SLVAILDADKEGFLRSERSLIQTIGRAARNLEGRAILYADKVTESMRKAIGETERRRVKQ
VTHNLAMGITPRSIVKQVKDLIDGVYSEKAGQEAEKLERDAMQRAQVEDMSEKDISREIK
RLEKLMMEHARNLEFEKAARVRDQLGILKEQAFGAAGRDNVVVIAAGTKD
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgactgtacccactcccgccgctcttgttacgtcctctgatgccgagccggttcgctcc
ggcacctttgtacgctaccccgactcaccctttgagctgtatcagccgtacccacccgct
ggcgaccaaccagaggccatcaaccaactggtggaaggcgtcaatgacggtgaggtgttt
caaatcttgctgggcgtcaccggctcgggcaaaaccttcaccatggccaatgtgattgcc
agactggggcggcccgccattgtgtttgcgcccaacaaaacactggcggcgcagttgtac
agcgagttccgtgagttttttcccaagaatgctgtggagtacttcgtcagttattacgac
tactaccagcccgaggcctatgtgccgcagcgcgatttgttcattgaaaaagactcggcc
atcaacgagcacatcgaacaaatgcgcttgagctgtaccaaaagcgtgctggagcgccgc
gacgtggtgattgtggccacggtgtcggccatctacggcattggccagcccgaggcgtat
cacaaaatggtgatgacgctgcgggtgggcgacaagctgggccagcgcgacatgattgcc
caactggtgcgcatgcagtaccagcgcaacgatgtggatttttcacgcggggcgtttcgg
gtgcgcggtgacaccattgatatttttccggccgagcacagcgagatggcgatccgggtc
gagctgtttgacgacgagatcgagtcactgcagctgtttgacccactcaccgggcgcatc
cggcaaaaaataccgcgctttaccgtctaccccagcagtcattacgtgaccccgcgcgag
caggtgctgtctgcggtggaggcgatcaagatcgagttggcagaacgcatcaaggagttt
gttggccagggcaagctggtggaggcgcagcgcattgagcagcgcacgcggtttgatctg
gagatgctcagcgaggtggggcattgcaagggcattgaaaactattctcggcacctgagc
ggtgccgcccccggtgagccgcctgccacgttgacagattacctgccgaaagacgcgctg
atgtttctggacgaaagccatgtgctgatcggccagtttggtgccatgtacaacggcgac
cgctcgcgcaagaccacgctggttgaatacggtttcaggctgcccagcgcgttggataac
cgaccgctcaagtttgaagagttcgagacccgcatgcgccaggccatttttgtctccgcc
acgcccgcgcaatgggaaaaagaccatgccggaaaaattgttgaacaactggtgcgcccg
accggcctggttgaccctgaagtggaagtgcgtccggcggtgaatcaggtggatgatgtg
ctgcaagaaatccgcattcgtgtcgaaaaacatgagcgcgtgttgatcaccacgctgacc
aagcgcatggccgaacagctgaccgattatttgagtgacaacggggtcaaggtgcgctac
ctgcacagcgacatcgacaccgtggagcgggtcgaaattttgcgcgacctgcgtttgggc
acgtttgatgtgctggtgggtatcaacctgctgcgcgagggactggatattcccgaggtg
tcgctggtagcgattctggatgccgataaagaaggctttttgcgctccgagcgctccctg
atccagaccattggtcgtgctgcccgcaatctggagggacgtgcgattttgtatgccgat
aaggtgaccgagtcgatgagaaaagcgattggcgagactgagcgccgtcgtgtcaaacag
gtgacgcacaacctggcgatgggaatcacaccacgctccatcgtgaagcaggtgaaagat
ctgatcgacggtgtttacagcgaaaaagccggccaagaggcagaaaagctggagcgcgac
gcgatgcagcgtgctcaggtggaagacatgagcgagaaagacatctcccgcgagatcaag
aggctggaaaaactgatgatggaacacgcgcgcaacctggagttcgaaaaggcggcgcgg
gtgcgcgatcagctgggtattttgaaggaacaggcctttggcgcagcgggcagggacaac
gtggtggttattgctgcaggaacaaaagactaa
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