KEGG   Rhodoferax ferrireducens: Rfer_2214
Entry
Rfer_2214         CDS       T00334                                 
Name
(GenBank) dihydrolipoamide dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
rfr  Rhodoferax ferrireducens
Pathway
rfr00010  Glycolysis / Gluconeogenesis
rfr00020  Citrate cycle (TCA cycle)
rfr00260  Glycine, serine and threonine metabolism
rfr00280  Valine, leucine and isoleucine degradation
rfr00310  Lysine degradation
rfr00380  Tryptophan metabolism
rfr00620  Pyruvate metabolism
rfr00630  Glyoxylate and dicarboxylate metabolism
rfr00640  Propanoate metabolism
rfr00670  One carbon pool by folate
rfr00785  Lipoic acid metabolism
rfr01100  Metabolic pathways
rfr01110  Biosynthesis of secondary metabolites
rfr01120  Microbial metabolism in diverse environments
rfr01200  Carbon metabolism
rfr01210  2-Oxocarboxylic acid metabolism
rfr01240  Biosynthesis of cofactors
Module
rfr_M00009  Citrate cycle (TCA cycle, Krebs cycle)
rfr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
rfr_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA
rfr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
rfr_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:rfr00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    Rfer_2214
   00020 Citrate cycle (TCA cycle)
    Rfer_2214
   00620 Pyruvate metabolism
    Rfer_2214
   00630 Glyoxylate and dicarboxylate metabolism
    Rfer_2214
   00640 Propanoate metabolism
    Rfer_2214
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    Rfer_2214
   00280 Valine, leucine and isoleucine degradation
    Rfer_2214
   00310 Lysine degradation
    Rfer_2214
   00380 Tryptophan metabolism
    Rfer_2214
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    Rfer_2214
   00670 One carbon pool by folate
    Rfer_2214
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rfr04147]
    Rfer_2214
Enzymes [BR:rfr01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     Rfer_2214
Exosome [BR:rfr04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   Rfer_2214
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Biotin_lipoyl Pyr_redox FAD_oxidored GIDA FAD_binding_2 Pyr_redox_3 NAD_binding_8 Thi4 AlaDh_PNT_C Biotin_lipoyl_2 DAO HI0933_like GCV_H FAD_binding_3
Other DBs
NCBI-ProteinID: ABD69938
UniProt: Q21WB5
LinkDB
Position
2424497..2426356
AA seq 619 aa
MALIDIKVPNIGDFAEVTVIELLVKPGDTVRAEQSLITVESDKASMEIPCSHAGVVKELK
VALGDKVSEGSVLLVLEAAEAPVVPDIKPNQAVAPVASTQAATQTVASPAVSAPIPVATA
ASYAGGVDLDCDLLVLGGGPGGYSAAFRAADLGLKVILVERYAQLGGVCLNVGCIPSKAL
LHVAAVIDEVSHMAALGVDFGAPTVSVDKLRAHKEKVVTKLTGGLAAMAKMRKVTVVRGY
GAFVGANHVQVEETTGTSQEKTGKTQTIAFKKCIIAAGSQAVRLPFMPDDPRVVDSTGAL
ALKEVPKRMLILGGGIIGLEMGTVYSTLGARLDVVEMLDGLMQGADRDLVKIWQKMNAPR
FDNIMLKTKTVGARATPEGIEVTFAAAEEGVKVPEPQTYDLVLQAVGRTPNGKKIAAEKA
GVAVTDRGFINVDIQMRTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAEVIAGELQGNKEL
ASAAFNARVIPSVAYTDPEVAWVGLTEDQAKAQGIKVKKGLFPWTASGRAIANGRDEGVT
KLLFDDSEDAHGHGKILGGGMVGTHAGDMIGEIALAIEMGADAIDIGKTIHPHPTLGESI
GMAAEVAHGSCTDLPPARK
NT seq 1860 nt   +upstreamnt  +downstreamnt
atggcactgatcgacatcaaagtccccaacattggcgacttcgccgaagtcaccgtcatc
gagctgctggtcaagcccggcgacaccgtccgggccgagcaaagcctgatcacagtggag
tccgacaaggcgtccatggaaattccctgcagccacgcgggcgtcgtcaaggagctcaag
gttgcgctgggcgacaaggtctctgaaggctcggtgttgctggtgctggaggcggcagag
gctcctgtcgttccagatatcaagccaaatcaggctgtagcccccgtcgcgtctacgcag
gcagctacacaaacagtagcatctccagctgtgagcgcgcccatcccagtcgccactgcc
gccagctatgcaggcggcgtcgatctggattgcgatttgctggtgctcggcggcggcccc
ggtggttattcggctgccttccgcgcggcggatttgggcctcaaagtcatcctggtcgag
cgctacgcccaactgggcggtgtctgtctgaacgtgggctgcatccccagcaaggcgctg
ctgcacgtggctgcggtcatcgatgaagtcagccacatggccgcgctcggcgtggacttt
ggcgcgcccacagtcagtgtggacaagctgcgtgctcacaaagagaaagtcgtcaccaag
ctcaccggcggcctggccgccatggccaagatgcgcaaggtgaccgtggtgcgcggctac
ggcgcgtttgtcggcgccaaccatgtgcaggtcgaagaaaccaccggcacatcccaagag
aaaaccggcaagacgcagaccattgcgttcaagaaatgcatcatcgctgcgggcagccaa
gccgtgcgcctgccgttcatgccagacgatccccgcgtggtggacagcaccggcgcgctg
gcgcttaaagaggtgcccaaacgcatgctgatcctgggcggcggcatcatcggcctggaa
atgggcacggtctacagcacgctcggcgcccgcctggacgtggtcgaaatgctcgacggc
ctgatgcagggcgcggatcgcgacctggtcaagatctggcaaaagatgaatgccccgcgt
ttcgacaacatcatgctcaagaccaaaacggtcggcgccagagccacgcccgagggcatc
gaggtgacgtttgccgcagcagaggagggcgtgaaagtgcccgaaccgcaaacctacgac
ctggtgttgcaggcggtgggccgcacgcccaacggcaagaagatcgccgccgagaaagcc
ggcgtcgcagtcacagaccgtggcttcatcaatgtcgacatccagatgcgcaccaacgtg
ccccacatcttcgccatcggcgacatcgtgggccagccgatgctggcgcacaaggcggtg
cacgaagcgcatgtggcagcggaagtgatagccggtgaattacaaggcaacaaagagctg
gccagcgccgccttcaacgcccgcgtcatcccgagcgtggcctacaccgaccccgaggtg
gcctgggtcggcctgaccgaagaccaggccaaggcgcaaggcatcaaggtcaagaagggg
ctgttcccctggacggcgtccggccgtgccattgccaacggccgcgacgaaggcgtgacc
aagctgctgtttgatgacagcgaggacgcgcacggccacggcaagatcctgggcggcggc
atggttggcacgcatgcgggcgacatgattggtgagattgcgctggcgatcgagatgggc
gctgacgccatcgacatcggcaagaccattcacccgcatcccacgctgggcgagagcatc
ggcatggcggctgaagtggcgcatgggagttgcacggacttgccgccggcgcgtaagtag

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