Rhodoferax ferrireducens: Rfer_2283
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Entry
Rfer_2283 CDS
T00334
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr00061
Fatty acid biosynthesis
rfr00071
Fatty acid degradation
rfr01100
Metabolic pathways
rfr01212
Fatty acid metabolism
rfr02024
Quorum sensing
rfr04146
Peroxisome
Module
rfr_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Rfer_2283
00071 Fatty acid degradation
Rfer_2283
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Rfer_2283
09145 Cellular community - prokaryotes
02024 Quorum sensing
Rfer_2283
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rfr01004
]
Rfer_2283
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rfr04147
]
Rfer_2283
Enzymes [BR:
rfr01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Rfer_2283
Lipid biosynthesis proteins [BR:
rfr01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Rfer_2283
Exosome [BR:
rfr04147
]
Exosomal proteins
Exosomal proteins of breast milk
Rfer_2283
Exosomal proteins of breast cancer cells
Rfer_2283
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GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
ABD70001
UniProt:
Q21W52
LinkDB
All DBs
Position
complement(2505745..2507394)
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AA seq
549 aa
AA seq
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MPADINPDLFTSIPDLLEKTATRFADRPAIHNLGHTISYAELERLTREFAAFLQGLPGMA
QGDRVAIMAPNLLQYPVALFGILRAGMVVVNVNPLYTPREVAHQLQDAGAKAIVIVENFA
AVLQRVLSNTPLKHVITTQVGDLLPWPRRSLINFVIKKVKKMVPAWRIDGAIGFRAALAR
GARSSFKPVQVKREDIAFLQYTGGTTGVSKGAMLTHRNILANVEQTGVWISASFQEGREI
AIAPLPLYHIFCLTSTLSFMKWGSLIVLITNPRDLPALIKELGRWKFSVMTGVNTLFNGL
LNAPGFDQLDFSTLKVVVGGGAAVQKTVAERWQQVTGRYITEAYGLTETSPGVCANPLAT
PWNGKIGLPIPSTEVSIRDEHFNELPVWHGEGDLEQHTGEICIRGPQVMKGYWNNPAETA
KVMQDGWLKTGDVGHLDGEGYFAITDRKKDMILVSGFNVYPNEIESVIAMHPGVLECGAV
GIPDEKTGEAVKVVVVRKDPSLTKDDILAHCKTQLTGYKMPRHIAFCDELPKTPIGKILR
RDLRDMPKS
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgacatcaatcccgacctgttcacgtcaatccccgatctgctcgaaaaaacc
gcaaccaggtttgctgaccgtccagctattcacaacctcggtcacaccataagttacgcc
gagttggagcgcctgacgcgtgaatttgccgcctttttgcagggattgccaggcatggcc
cagggtgaccgcgtcgccatcatggcgccaaacctgctgcaatacccggtggcactgttc
ggcatcctgcgcgctggcatggtcgtggtgaatgtcaatccgctgtacacgccgcgtgaa
gtggcgcatcagttgcaggatgccggcgccaaagccattgtcattgttgagaattttgcc
gctgtgctgcagcgcgtgctcagcaacacgccgctcaagcacgtgatcaccacgcaagtc
ggcgacctgctgccgtggccgagacgttcgttgatcaacttcgtcatcaagaaggtcaaa
aagatggtgcctgcctggcgcattgatggcgcgattggctttcgggcggcgctggcacgc
ggcgcaaggtcgtcgttcaagccggttcaagtgaagcgcgaggacatcgcattcctgcaa
tacaccggcggcaccaccggtgtctcaaagggtgccatgctgacccaccgcaacatcctg
gccaacgtggagcaaacaggcgtctggatatcggcgagctttcaggaaggccgcgagatt
gccattgcgccattgccgctgtatcacatcttttgcctgacctcgaccctgtcgttcatg
aagtgggggagcctgatcgtgctgattaccaatccgcgcgacttgccggcactgatcaag
gagctcgggcgctggaagttcagcgtcatgaccggcgttaataccttgttcaacggcctc
ttgaatgccccgggcttcgaccaactcgacttttcgacgttgaaggtggtggtgggcggt
ggtgccgccgtgcaaaagaccgtggccgagcgttggcagcaagtcactgggcgttacatc
acggaagcctatggtctcacagaaacctcgccgggggtctgcgccaatccgctggctaca
ccctggaatggaaaaataggtttgcccatcccgtccactgaggtgtcgatccgggacgaa
cacttcaacgagttgccggtctggcacggcgagggcgatctggagcaacacacaggcgag
atttgcatccgcggcccgcaagtgatgaagggttactggaacaacccggcagaaacggcc
aaggtgatgcaggacggttggttaaagaccggcgatgtcgggcacctggacggtgagggc
tacttcgccatcaccgaccgcaaaaaagacatgattttggtctctggtttcaacgtctac
ccgaacgaaatcgagagcgtgatcgcgatgcatcctggggtgcttgaatgcggagcggtg
ggcatacccgatgaaaaaacgggcgaagcggtgaaagtggtggttgtcagaaaagacccc
agcctcacgaaagacgatatccttgcgcactgcaagacccaactgaccggctacaagatg
ccgcgccacatcgcgttttgcgatgaattacccaagacgccgatcgggaaaatcctgcgc
cgcgatctgcgcgacatgcccaagagctag
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