Rhodoferax ferrireducens: Rfer_2899
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Entry
Rfer_2899 CDS
T00334
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rfer_2899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfr03021
]
Rfer_2899
03019 Messenger RNA biogenesis [BR:
rfr03019
]
Rfer_2899
Transcription machinery [BR:
rfr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Rfer_2899
Messenger RNA biogenesis [BR:
rfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Rfer_2899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA
S1CSD-TOTE-2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABD70610
UniProt:
Q21UE3
LinkDB
All DBs
Position
3207856..3209118
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEELEIENTGRMRKQELMFAIIKKRARAGEQIFADGVLEILPD
GFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALNKLEKVN
GGGPEENKHKVMFENLTPLFPNKQMRLEQDIKTDENITGRIIDIIAPIGKGQRALLVAPP
KSGKTVMMQHIAHAIAANYPEIHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDSNALQRPKRF
LGAARNVEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIHLDRRLYEKRVFPSIQL
NRSGTRREELLLAPEILQKTRILRQFLYNMDEIESMEMVLKQMRATKNNSEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacttaaacgaactcaaggcactgcacgtgtcagaagtcctcaagcaagctgaagag
cttgagattgaaaacaccggacgcatgcgcaagcaagagctgatgtttgccatcatcaag
aagcgcgcccgcgccggtgagcagatctttgccgatggcgtgctggaaatcctgcccgat
ggttttggttttttgcgcagccccgacaccagctacaccgcctccacggacgacatttac
atcagcccgagccaggtgcgccgcttcaacctgcacaccggcgacatgattgaaggcgag
gtgcgcacgcccaaagacggcgagcgctactttgccctgaacaagcttgaaaaagtcaac
ggcggcgggcctgaagaaaacaaacacaaggtgatgtttgagaacctgacgccgctgttt
cccaacaagcaaatgcggctcgaacaggacatcaagaccgacgaaaacatcaccggccgc
atcatcgacatcatcgcgccgattggcaaagggcagcgcgccctgctggtggcgccgccc
aaaagcggcaagacggtgatgatgcagcacatcgcccacgcgattgccgccaactatccg
gaaattcacatgatggtgctgctggtcgacgagcggcccgaagaagtgaccgagatgcag
cgcaccgtcaagggcgaggtgatcgcctccacctttgacgagcccgccgcccgccacgtg
cacgtggccgagatggtgatcgagcgcgccaaacgcctggtcgagctgaaaaaagacgtc
gttatcctgctggattccatcacgcgcctggcgcgcgcctacaacaatgtcgtgccatcc
tccggcaaggtattgaccggtggcgtcgactccaacgcactgcaacgccccaagcgcttc
ctgggcgcggcgcgcaatgtggaggaaggcggctcgctgaccatcatcgccaccgccctg
atcgacaccggcagccgcatggacgaagtgatttttgaagaattcaagggcaccggcaac
agtgaaatccacctggaccgccgcctgtacgaaaaacgcgtgttcccgtcgatccagctc
aaccgcagcggcacccgtcgcgaagagctgttgctggcccccgagattttgcaaaaaacc
cgcatcctgcgccagtttctctacaacatggatgaaatcgagtcgatggaaatggtgctc
aagcaaatgcgcgccaccaagaacaacagcgaattttttgacatgatgcgccgcggcggc
tag
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