Rhodoferax ferrireducens: Rfer_3000
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Entry
Rfer_3000 CDS
T00334
Name
(GenBank) DNA-3-methyladenine glycosylase II / Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rfer_3000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rfr03000
]
Rfer_3000
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_3000
Enzymes [BR:
rfr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Rfer_3000
Transcription factors [BR:
rfr03000
]
Prokaryotic type
Helix-turn-helix
AraC family
Rfer_3000
DNA repair and recombination proteins [BR:
rfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rfer_3000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HTH_36
RecR_HhH
HTH_Tnp_ISL3
HTH_23
RPAP3_C
Motif
Other DBs
NCBI-ProteinID:
ABD70711
UniProt:
Q21U42
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Position
3307705..3309252
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AA seq
515 aa
AA seq
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MTPHHAQPDDDACYLALRAKDARFDGCFYTGVTSTGIYCRPVCRVRTPKRENCRFFVHAA
QAEQAGFRPCLRCRPELAPRTSALGHVFETKPWSIQDASSILATQAARLLDTPEAWTEST
PSVQRLAQRLGVSDRHLRRIFEAQFGVSPLQYLQTQRLLSAKQLLTDTALAVTQVAHLSG
FTSVRRFNAVFAAHYALSPTQLRRNGAKHGHDAPGQSLQVRLAYRPPYDVDAMLQFFGKR
QVTGIECVTLEPGNQSIGKTVAVQCGQTLYTGWLVARFEAAGNRVDLRLSDSLREVLPWV
MARVRAMLDLDADPRAISSLLRTSFPRGDGLRVPGTLDGFELAVRAVLGQQITVAAARTL
AARLVQRFGEPIETPIAGLNRLFPSAAALAAASGDALGQLGIVRQRQAAIQAIASAVAAQ
RLPLHAGADVPSTLAALKALPGIGDWTAQYIAMRALRWPDAFPAGDVALHKALGVQDAKN
PAKEAQAASLAWQPWRSYAVIRAWAAPPVAADATK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgacaccccatcacgcacagcccgacgacgacgcctgctacctcgcgctcagggcgaag
gacgcacgttttgacggctgcttttacaccggcgttacatctaccggcatttattgccgt
ccggtgtgccgggtacgcacccccaagcgtgaaaactgccggttttttgttcacgcggcg
caggcggaacaggccggttttcggccctgcctgcgctgccgcccggaactcgcaccgcgc
acctctgccctcggccacgtgtttgaaaccaagccgtggtccatccaggacgcctccagc
atcttggccactcaggcggcccgcctgctggacacaccggaagcctggaccgagagcaca
ccgagcgtgcagcggctggcccagcgcctgggcgtgagcgaccgccacctacgccgcatt
tttgaagcgcagttcggcgtgtcgcccctgcagtacctgcaaacacagcgcttgctgagc
gccaaacagttgctgaccgacaccgcactggccgtcacgcaggtcgcgcacttgagtggc
ttcaccagtgtgcggcgcttcaatgccgtgtttgccgcgcactacgccctcagcccgacg
cagttgcgccgcaacggcgcaaaacacgggcacgatgcacccggccagagccttcaggtc
cggctggcctaccgcccgccctatgacgtggacgccatgctgcagttctttggcaaacgc
caggtcacggggattgaatgcgtcacgctggagcccggcaaccagagcatcggcaaaacc
gtggccgtgcaatgcggccagacgctctacaccggctggctggtggcccgctttgaggct
gctggcaaccgtgtggatctgcgcttgagtgattcgctgcgcgaggtgctgccgtgggta
atggcgcgcgtgcgggccatgctcgatctggatgcggatccccgcgccatcagcagcctg
ttgcgcaccagcttcccacggggcgacggtttgcgcgtgcccggcaccctggacggcttt
gagctggccgtgcgcgccgtcctgggccaacagatcaccgtggctgcggcgcgcaccctg
gcggcaagactggtacaacggtttggtgaaccgatcgaaaccccgatcgccgggctgaac
cggctttttccaagcgccgcggcactggccgccgccagcggcgacgcactgggccaactg
ggcatcgtccggcagcggcaagcggccattcaggccatcgccagcgccgtggcggcgcag
cgcctgccactgcacgccggggcggacgtgccctccaccctggccgccctgaaggctttg
cccggcattggcgactggaccgcccagtacatcgccatgcgcgcactgcgctggccggac
gcctttccggccggcgacgtcgccctgcacaaggcactgggcgtgcaagacgccaaaaac
ccggccaaagaagcgcaggccgcgtcactggcctggcaaccgtggcgcagctacgccgtg
atccgagcctgggccgccccaccggttgccgcagatgctacaaaatag
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