Rhodoferax ferrireducens: Rfer_3009
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Entry
Rfer_3009 CDS
T00334
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rfer_3009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfr03019
]
Rfer_3009
03110 Chaperones and folding catalysts [BR:
rfr03110
]
Rfer_3009
03029 Mitochondrial biogenesis [BR:
rfr03029
]
Rfer_3009
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rfr04147
]
Rfer_3009
Enzymes [BR:
rfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Rfer_3009
Messenger RNA biogenesis [BR:
rfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Rfer_3009
Chaperones and folding catalysts [BR:
rfr03110
]
Heat shock proteins
HSP60 / Chaperonin
Rfer_3009
Mitochondrial biogenesis [BR:
rfr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Rfer_3009
Exosome [BR:
rfr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Rfer_3009
Exosomal proteins of other body fluids (saliva and urine)
Rfer_3009
Exosomal proteins of breast cancer cells
Rfer_3009
Exosomal proteins of colorectal cancer cells
Rfer_3009
Exosomal proteins of bladder cancer cells
Rfer_3009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
ABD70720
UniProt:
Q21U33
LinkDB
All DBs
Position
3315936..3317570
Genome browser
AA seq
544 aa
AA seq
DB search
MNPKQLIFHDDARDKIRRGVDTLAQAVKVTLGPRGRTVILERDFGSPQIVNSGVLVAKSI
ELEDRFENMGAQLLREVAARTSEMAGDGTTTATVLAHSMILEGLRYLAGGMNPMDLKRGI
EIAIDAVVAELKQLSRPCASSQEIAHVAAISANNDRSIGDLLASAIDKVGREGAISIEDG
SGLVSVLDVVEGLQFDRGFLSPYFINNAERQSAVLEDVAILLCEGRLSSLKDLLPLLEEI
VKEGRPLLVIAEEVDNDSLAALVINTIRGTLKTCAVKAPGFGDRRKAMVQDIAVLTGGSV
VSDEVGLTLGKVKLSDLGRATRAEITKETTTLIGGAGQPKAIKERIATIRKERELASSDY
DRDKLDERAAKLAGGVALIKVGAATETELKERKIRVEDALHATRAAVEEGIVPGGGVALL
RARRALLTLTGSTLDETSGIRLVARSLEEPLRCIVSNAGDEPSVILNRVDESPDPAFGYN
AATRTYGDLLQMGVIDPAKVTRLALQNAASIASLILGTACLIATAPKPLPEEGAHGPGGE
TPMF
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccaagcagctaattttccatgacgacgcccgcgacaaaattcgccgtggcgtg
gacacgctggcgcaagcggtcaaagtgactctcggcccgcgtgggcgcactgtcattctg
gagcgcgactttggctcgccgcagatcgtcaactccggcgtgctggtagccaagtcgata
gaacttgaggaccggttcgagaacatgggggcgcaactgctgcgcgaggtggcagcgcgc
accagcgaaatggcgggcgacggcaccaccaccgccaccgtgctggcgcacagcatgatt
ctggagggcctgcgctatctggccggcggcatgaatccgatggatctcaagcgcggcatc
gagatcgccatcgacgcggtggtggctgagctcaaacagctgtccaggccctgtgccagc
tcgcaggagattgcgcatgtggcggcgatctcggccaacaacgatcgctccattggcgac
ctgctggccagcgcgatcgacaaggtcgggcgtgaaggggcaatctcgatcgaggacgga
tccggcttggtcagcgtgctcgacgtggtggagggcctgcagtttgaccgtggttttctg
tcgccctacttcatcaacaatgccgagcgccaaagtgcggtgctggaagatgtggcgatt
ttgctgtgtgaaggtcgcctgagctcgctcaaagacttgctgcccctgctcgaagagatc
gtgaaggagggtcggcccctgttggtcatcgccgaggaggtggacaacgattcgctggcg
gcgctggtgatcaacacgatacgcggcaccctgaaaacctgcgcggtcaaggcgccgggc
tttggcgaccggcgcaaggcgatggtgcaggacattgcggtgctcaccggtggcagcgtc
gtgagcgacgaagtcgggctgacgctgggcaaggtcaagctgtcggatttggggcgcgcc
acccgggctgaaatcaccaaggaaaccaccacgctgattggcggcgccggccagcccaag
gcgatcaaggaacgcatcgccaccatccgcaaagaacgcgagttggcgagcagcgactat
gaccgtgacaagctcgacgagcgcgcggccaagctggccggtggtgtggccttgatcaag
gtcggcgccgccactgaaaccgagttgaaggagcgcaagatacgggtcgaagacgccttg
cacgccacccgcgcggcggttgaagaaggcatcgtgcctggcggcggagtggcacttttg
cgcgcccggcgcgccctgctcaccttgaccggcagcacgctcgatgagacatcgggcatt
cgcctggtggcccgctccctggaagaacccctgcgctgcatcgtcagcaatgccggtgat
gaaccgtcggtgatcctgaaccgggttgatgaatcaccggaccccgcttttggctacaac
gcggcgacccgcacttatggtgacttgttgcagatgggcgtcatcgacccggccaaggtc
acgcggctcgccttgcaaaacgccgcctcgattgccagtctgattctcggcaccgcctgc
ctgattgccaccgcacccaaacccttgccagaagaaggcgcgcacggccccggtggcgaa
acgcccatgttttga
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