Rhodoferax ferrireducens: Rfer_3234
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Entry
Rfer_3234 CDS
T00334
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03410
Base excision repair
rfr03430
Mismatch repair
rfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rfer_3234
03430 Mismatch repair
Rfer_3234
03440 Homologous recombination
Rfer_3234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_3234
DNA repair and recombination proteins [BR:
rfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Rfer_3234
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Rfer_3234
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rfer_3234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABD70943
UniProt:
Q21TG0
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All DBs
Position
3582403..3584133
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AA seq
576 aa
AA seq
DB search
MKILVREIPPRSAWALEQAGIHPLLAQLYAARGVQSVQELDDGLTRLIAPTEMLGLSAAA
TLLADAIAADQTLCIVADYDCDGATACAVGIRGLRLLGAKHVSYIVPDRVVDGYGLTSPI
SERVKASGADVLITVDNGIASFEGVATARALGLQVLVTDHHLPASRDGQIVLPEADVIVN
PNQPGCTFASKSIAGVGVMFYVLLALRAELRQRGVFHAATQPKLDALLPLVALGTVADVV
KLDANNRRLVAQGLKRVRALMLPTGLASLFVAAGRDAQVATTFDFGFALGPRINAAGRLS
DMTLGIECLLTDDAARGLELAKALDGINRERREIEGSMREQALAVAESLFDDNEEAPPAI
CVFDPDFHEGVVGIVASRIKDKLHRPTFVFAQSKAPGREHELKGSGRSIPGFHLRDALDL
VAKRHPGVLLRFGGHAMAAGCTIAVEDFDAFEQSLSQVAREWLDAATLMRRLDTDGPLKP
EYRRVELVDALHKEVWGQGFAPPTFSEEVEVLSQRLVGEKHLALKLKHQGQPVDGIWFGH
TEPLPARVKLAFRLDADAWNGVRRVRFLVEAAQAEL
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatattagtgcgtgagattccgccccgttctgcctgggcgctggaacaagccggc
atccacccgctgctggcccaactttatgcagcacgcggcgtacaaagcgtgcaggagctc
gacgacggcctgacgcgcctgattgcgcccactgagatgctgggcttgagcgcggcggcc
acgctgctggccgacgcgattgcggcggaccagacactctgcatcgtggccgactacgac
tgcgacggcgccaccgcctgcgcggtgggcattcgcggcttgcgcctgctgggggcgaaa
cacgtcagctacatcgtccccgaccgcgtggtcgatggctacggcctgacctcaccaatt
tcagagcgcgtcaaggccagcggcgctgacgtgctgatcacggtggacaacggcatcgcc
agttttgagggcgtcgccaccgcacgggccttgggcttgcaggtgctggtaacggatcac
cacttgcccgccagccgggacggccagatcgtgctgcccgaagcggacgtgatcgtgaat
ccgaaccagcccggctgcacctttgccagcaagtcgatcgccggtgtgggcgtgatgttt
tacgtgttgctggcactgcgcgccgagctgcgccagcgtggcgtgttccatgcggccacg
caaccgaagctcgatgccttgctgccgctggtggcgctgggcacggtggccgacgtggtc
aagctcgacgcgaacaaccgccgcctcgtggcccaaggcttaaaacgggttcgcgccctg
atgcttcctaccggtttagctagtctttttgtagcagctgggcgcgacgcccaggtcgcc
accacgtttgactttggctttgccttggggccgcgcatcaacgccgccgggcgtttgtcc
gacatgaccctgggcattgaatgcctgctgactgacgatgcagcgcgtggcctggagctg
gcgaaagcactcgacggcatcaaccgcgagcggcgcgagattgaaggcagcatgcgcgaa
caggctttggccgtggccgaatccttgtttgacgacaacgaggaggcgccgccagccatc
tgcgtgttcgaccccgactttcacgagggtgtggtcggcatcgtggcctcgcgcatcaag
gacaagctgcaccggccgacctttgtttttgcgcaaagcaaagcgccggggcgcgagcat
gagctcaagggctcgggccggtccatccccggctttcacctgcgtgacgcactcgacctg
gtggccaaacgccaccccggcgtgctgctgcgttttggcggccacgccatggcggccggt
tgcaccattgccgtggaggacttcgatgccttcgagcagagcctgagccaggtcgcgcgg
gaatggctcgatgccgccacgttgatgcgccgcctcgataccgacggccccttgaaaccc
gagtaccgccgggtcgaactggtggacgcgctgcacaaggaagtctggggtcagggtttt
gcgccgcccaccttcagcgaagaagtcgaagtgctgtcgcagcgtctggtgggtgaaaaa
cacctggcactcaagctcaagcaccagggccagccggtggacggcatctggtttggccac
accgagccgttgcccgcgcgcgtcaaactcgcgttccggctggatgccgatgcctggaac
ggcgttcgccgggtgcggtttttggtggaggcggctcaggcggagctttga
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