Rhodoferax ferrireducens: Rfer_3411
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Entry
Rfer_3411 CDS
T00334
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rfr
Rhodoferax ferrireducens
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rfr03016
]
Rfer_3411
Enzymes [BR:
rfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Rfer_3411
Transfer RNA biogenesis [BR:
rfr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Rfer_3411
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ABD71120
UniProt:
Q21SY3
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All DBs
Position
3794794..3796881
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AA seq
695 aa
AA seq
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MFLLFEEAGKFMAGRVLSEAETSAQVELDSGKRVKVKAANFLLKFEKPTPAQFVLEAQAL
SQTIELELAWEFAPEEEFGFADLARDYFSLHATLSEQAGMLVRLFEAPHYFRRAGKGRFR
KAPADIIALALAAIEKKKLIAQQTEQWVAELSQGSCPQPIRDQLYKILFKPDKNAPEYKA
VVEASRATHLGPLELLIKAGAIDSPYQFHWKRFLLENFPRGVGFAKIDAPLIKDELPLSP
ARAFSVDDSATTEIDDALSVQGLGTGTVRLGIHIAAPGLAFQPGSAIDQLGRNRLSTVYM
PGYKITMLPDEVVQNYTLMEGRDCPAVSLYVTLDEATLEIKSTETQLERVHIGANLRHDQ
LDAIVTTEWLEDPGFMHEMDPQPLQHKREQLSFLYRLANDLKAKREVVRGKPENFNRPDY
NFKLVGNDGAEPQGTEQVQISTRQRGAPLDLIVSEAMILANSTWGSWMAELGVPGIYRSQ
ASMLPGVKVRMGTRSLPHAGLGVKSYAWSSSPLRRYVDLVNQWQIIACARHGKTAALAAP
FKPKDAELFSIISGFDAAYFAYNSFQGAMERFWTLKYVQQQGIVEIEATLFKDNLVRADH
LPLVLPVMGAQGLPRGARVRVKLGDIDEVSLDVHGTVIERLDLPLETEAEIEADEEDDLT
VAGPIAIAVDMSEPAADSLENGSNPAQAAADNPAP
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtttttactctttgaagaagccggaaaatttatggccggtcgggtgctgtctgaagcg
gagacgtctgcgcaggtggaattggacagcggcaaacgggtcaaggtgaaggccgccaac
tttttgcttaaatttgagaaaccaacgccagcgcagtttgtgctggaggcgcaggcgctc
agccagacgatcgagctggagctggcctgggagtttgcgccggaagaagaatttggtttt
gccgacctggcgcgcgactatttttcactgcacgccaccttaagcgaacaggccggcatg
ctggtgcgcctgtttgaggcgccgcattactttcgccgcgcgggcaaggggcgttttcgc
aaggccccggccgacatcatcgcgctggccctggccgcgatcgagaaaaagaaactgatc
gcgcagcaaaccgagcagtgggtcgccgagctgagccagggcagttgcccgcagccgatc
cgcgaccagctttacaaaatcctgttcaagcccgacaaaaacgcgcccgagtacaaggcg
gtggtggaagcctcgcgcgccacgcatctggggccgctggagttgctgatcaaagccggt
gccatcgattcaccgtaccagtttcactggaagcgcttcctgctggagaacttccccagg
ggcgtgggctttgccaagatcgatgcgccactgatcaaggacgagttgcccctgtcacca
gcgcgggcattttcagttgacgactcggccaccaccgaaattgacgacgcgctctcggtg
cagggcctgggcaccggcaccgtgcggctgggcatccacattgcggcgcccgggctggcg
tttcaacccggcagtgcgattgaccaattgggccgcaaccgcctgtccaccgtctacatg
ccgggctacaagatcaccatgctgcccgacgaggtggtgcaaaactacaccttgatggag
ggacgcgactgcccggcggtgtcgctgtatgtgacgctggacgaagccacgctggagatc
aagagtaccgagacgcaactggagcgggtgcacatcggtgccaatctgcgccatgaccag
ctggacgccatcgtcaccaccgaatggctggaagaccccggctttatgcatgaaatggac
ccccagcccttacagcataagcgtgagcagctctcatttttataccgcttggcgaatgac
ctgaaagccaaacgcgaagtggtgcggggcaaaccggagaacttcaaccggcccgattac
aacttcaagctggtgggcaatgacggggccgagccgcagggcaccgagcaggtgcagatc
agcacccgccagcgcggcgcgccgctggacctgattgtctccgaggccatgattctggcc
aacagcacctggggcagctggatggcggagctgggggtgcccggcatttaccgcagtcag
gcctcgatgttgccgggcgtcaaggtgcgcatgggcacccgctccttgccccatgccggc
ctgggtgtcaaaagctatgcctggagcagctcgccgctgcgccgttacgtcgacctggtc
aaccagtggcaaatcattgcctgcgcccgccacggtaaaaccgccgccttggccgcgccc
ttcaagcccaaagacgccgagctgttttcgatcatttccggctttgatgccgcctacttt
gcctacaacagctttcagggtgcgatggagcgcttctggacgctcaaatacgtgcagcag
caaggcattgtcgaaattgaagccacgctgttcaaggacaacctggtgcgcgccgaccac
ctgccgctggtgctgccggtgatgggtgcgcaaggcttgccacgcggggcccgggtgcgg
gtcaaactcggagacattgacgaggtgtcgctggacgtgcatggcaccgtgatcgagcgg
cttgacctgccgcttgagaccgaggccgagatcgaggccgacgaagaagacgatctcacg
gtcgccggcccgattgccattgccgttgacatgagcgagcccgccgccgacagccttgaa
aatggcagcaacccggcccaggccgccgccgacaaccctgccccgtga
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