Rhodoferax ferrireducens: Rfer_3542
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Entry
Rfer_3542 CDS
T00334
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr00061
Fatty acid biosynthesis
rfr00071
Fatty acid degradation
rfr01100
Metabolic pathways
rfr01212
Fatty acid metabolism
rfr02024
Quorum sensing
rfr04146
Peroxisome
Module
rfr_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Rfer_3542
00071 Fatty acid degradation
Rfer_3542
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Rfer_3542
09145 Cellular community - prokaryotes
02024 Quorum sensing
Rfer_3542
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rfr01004
]
Rfer_3542
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rfr04147
]
Rfer_3542
Enzymes [BR:
rfr01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Rfer_3542
Lipid biosynthesis proteins [BR:
rfr01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Rfer_3542
Exosome [BR:
rfr04147
]
Exosomal proteins
Exosomal proteins of breast milk
Rfer_3542
Exosomal proteins of breast cancer cells
Rfer_3542
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
LPD22
DUF2464
Motif
Other DBs
NCBI-ProteinID:
ABD71247
UniProt:
Q21SK6
LinkDB
All DBs
Position
complement(3938028..3939974)
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AA seq
648 aa
AA seq
DB search
MQTTFPRLLLNHAAQRPGETAMREKEYGIWQALSWADLAVLVEQLACGLHQAGLRRDEHM
IVIGANRPRLYATMLAVQSLGAVPIPLYQDAAAPECVFPINNADVRFAFAEDQEQVDKLL
EIREQCPQLSNIYFDDPRGLRNYDEPGLMAVDDLLAAGKTFAAQHQEFLPSEVSRIKPDD
VAAMFFTSGTTGNPKGVVHTHNSLLNRAKAGADFDKLTHSEEVLAYLPPAWIGQNIFSYA
QWLACGYVVNCPESAATVTIDLKEVGPTYYFAPPRVFEGLLTSVMIRMEDAGTLKRNMFQ
FFMGVAKRVGPTLMDGKSVPLSDRVLYTLGNFMVYGPLRNNLGMSRVRVAYTAGEAIGPD
LFSFYRSIGINLKQLYGSTETAVFVCLQPDNEARADTVGVPCSGVEIKVADNGEILVKSP
GLLKGYFKNPEATAEVLTPDGWYHTSDAGFLDAHGHLKIIDRVKDVGRIKGGANDGAMFA
PKYVENKLKFFPHIKEVVAYGDGREKVCVMINIDVDAVGNWAERRNLPYAGYTDLAQKPE
VYQLVKECVEKVNADLSVDTLLAGSQVSRFLVLHKELDADDGELTRTNKVRRGFIAEKYD
VLVDALYGGKTSQFIETQVKFEDGRTGSISATLKIEDAKTFTPVKAAA
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccacttttcctcgactgctgttgaatcacgccgcccagcgtccgggcgagact
gccatgcgtgaaaaagagtatggcatttggcaagccctgtcctgggctgatctggccgtg
ctggtggagcagcttgcttgtggcctgcatcaagcggggctgcgccgcgacgaacacatg
attgtgattggcgccaaccggccgcgtttgtacgccaccatgctggccgtgcagtccctg
ggggccgttcccattccgctctatcaggacgccgccgcgcccgagtgtgtcttccccatc
aacaatgctgacgtgcgttttgcctttgccgaagaccaggaacaggtcgacaaactgctg
gaaatccgggaacagtgcccgcaactttcaaatatctactttgacgatccgcgtggcctg
cgtaactacgacgagccgggactgatggcggtcgatgatttgctggccgccggcaagacg
tttgccgcccagcaccaagaattcctgccatccgaggtgagccggatcaagcccgatgat
gtggcggccatgtttttcacctcgggtaccaccggcaaccccaaaggtgtggtgcacacc
cataactcgctgttgaaccgggccaaggccggagctgactttgacaagctgacccactcc
gaggaagtgctggcctatttgccgccagcctggattggacaaaatattttcagctacgcg
cagtggctggcttgcggctatgtggtcaattgtccggagtcggcggccaccgtcacgatc
gacctgaaggaggttggccccacctattactttgcaccgccgcgggtgtttgaaggcttg
ttgaccagcgtgatgatccgcatggaagatgccggcacgctgaaacgcaacatgtttcaa
ttcttcatgggcgtggcaaaaagggtcggcccgacgctgatggatggcaagtcggtgccg
ctgagcgaccgtgtgctgtacacgctgggcaacttcatggtgtatgggccactgcgcaac
aacctgggcatgagtcgggtgcgggtggcttataccgcgggcgaggccatcggtccggac
ttgttcagtttttatcgctccatcggcatcaatctcaaacagctttacggctctaccgag
acggctgtgtttgtctgcctgcagcccgataacgaagcgcgcgccgacaccgtgggtgtg
ccctgttccggggtcgaaatcaaggtggctgacaacggtgaaattttggtcaagtcgcca
ggcctgctcaagggctatttcaagaatcctgaagccactgccgaggtgttgacgccggac
ggctggtaccacaccagcgatgccggttttctggatgcccacggccacctcaagatcatc
gaccgcgtcaaagacgtggggcgcatcaaggggggtgccaatgacggcgccatgttcgcc
cccaagtatgtggagaacaagctcaagttcttcccgcacatcaaagaggtggtggcctac
ggtgacggccgcgaaaaggtctgcgtcatgatcaacatcgatgttgacgcggtgggcaac
tgggccgagcggcgcaacctgccgtatgccggttacaccgatctggcgcaaaagcccgag
gtctaccaactcgtcaaggagtgtgttgaaaaggtgaatgccgacctgagcgtggacacg
ttgctggcgggctcgcaggtcagccgctttctggtgctgcacaaggaactcgacgccgac
gacggcgaattgacccgcaccaacaaggtacggcgcggctttattgccgaaaaatacgat
gtgctggtggatgccttgtatggcggcaaaacatcgcagttcatcgaaacccaggtcaag
tttgaggatgggcgcaccggcagcatcagcgcgacgctgaaaattgaagatgcgaagaca
tttacacccgtcaaggcggcagcatga
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